PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03241.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 428aa    MW: 46636.7 Da    PI: 5.4659
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03241.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.75.9e-12386418131
                          GATA   1 CsnCgttkTplWR..rgpdgnktLCnaCGlyyr 31 
                                   C++Cgt +Tp+WR   gp+g  tLC aCG+ y 
  Zpz_sc03241.1.g00010.1.am.mk 386 CRHCGTYETPQWRicTGPEGRFTLCDACGIQYS 418
                                   *************77799************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.85E-5113164No hitNo description
SMARTSM004010.0047113157IPR000679Zinc finger, GATA-type
SMARTSM004010.13225270IPR000679Zinc finger, GATA-type
SMARTSM004015.9E-5380428IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.183380417IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-9381419IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.56E-9382422No hitNo description
CDDcd002028.34E-7385417No hitNo description
PfamPF003204.7E-9386417IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVPGDLPDDE SPAALAEQLF GTGDDPMAFI DDTVRVVMVL QALEVVAATG KDGKEEEELK  60
GLSNKDVFPT LNTKALPEAP ATAPRTQRKG VRPSQGAASS LPPALRPGTG APAKAGRQCR  120
HCGTEGSYTL CNVCGIQYKR GALLPEYRPL NIPTFSPDLH SNHHQRVIDM ARSREEEKKE  180
SFLSDADLEA IINDPALQAL DASGMDEHRD WVLKNAFQPG TLAPTKAGQP CRHCGTYETP  240
LWHICTGPEG RFALWGIQYC NVTLLPEYPP LKTPTSSALH SDWRQCVIDT ARFLEAEWSR  300
SGIGLEAFLR DMVWDMLAAS GHYNKEELES LSKAASTLDT KSLPEAAATA QLPQTMGVRW  360
SREAASSPLP ALQPGNLALA KAGQQCRHCG TYETPQWRIC TGPEGRFTLC DACGIQYSNV  420
TVLPEYRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03241.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSi039011m5e-32(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2818535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.11e-19GATA transcription factor 6