PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G51080.1 | ||||||||
Common Name | F24M12.120, GATA6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 312aa MW: 34678.4 Da PI: 7.5629 | ||||||||
Description | GATA transcription factor 6 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.1 | 2.5e-18 | 223 | 257 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g ktLCnaCG++y++ +l AT3G51080.1 223 CGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 257 9******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 6.3E-108 | 1 | 312 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 1.33E-13 | 215 | 278 | No hit | No description |
SMART | SM00401 | 2.3E-14 | 217 | 271 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.688 | 217 | 253 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.3E-14 | 221 | 255 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.26E-14 | 222 | 270 | No hit | No description |
Pfam | PF00320 | 2.9E-16 | 223 | 257 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 223 | 248 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MESVELTLKN SNMKDKTLTG GAQNGDDFSV DDLLDFSKEE EDDDVLVEDE AELKVQRKRG 60 VSDENTLHRS NDFSTADFHT SGLSVPMDDI AELEWLSNFV DDSSFTPYSA PTNKPVWLTG 120 NRRHLVQPVK EETCFKSQHP AVKTRPKRAR TGVRVWSHGS QSLTDSSSSS TTSSSSSPRP 180 SSPLWLASGQ FLDEPMTKTQ KKKKVWKNAG QTQTQTQTQT RQCGHCGVQK TPQWRAGPLG 240 AKTLCNACGV RYKSGRLLPE YRPACSPTFS SELHSNHHSK VIEMRRKKET SDGAEETGLN 300 QPVQTVQVVS SF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27088 | 0.0 | floral meristem| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42565819 | 0.0 | ||||
Expression Atlas | AT3G51080 | - | ||||
AtGenExpress | AT3G51080 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the GATA factor family of zinc finger transcription factors. | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00404 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G51080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G51080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY064048 | 0.0 | AY064048.1 Arabidopsis thaliana putative transcription factor (At3g51080) mRNA, complete cds. | |||
GenBank | AY117315 | 0.0 | AY117315.1 Arabidopsis thaliana putative transcription factor (At3g51080) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_190677.1 | 0.0 | GATA transcription factor 6 | ||||
Swissprot | Q9SD38 | 0.0 | GATA6_ARATH; GATA transcription factor 6 | ||||
TrEMBL | A0A178VKT0 | 0.0 | A0A178VKT0_ARATH; GATA transcription factor | ||||
STRING | AT3G51080.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3698 | 25 | 61 | Representative plant | OGRP68 | 17 | 287 |
Link Out ? help Back to Top | |
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Phytozome | AT3G51080.1 |
Entrez Gene | 824272 |
iHOP | AT3G51080 |
wikigenes | AT3G51080 |