PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03182.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 783aa    MW: 83262.7 Da    PI: 7.8188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03182.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06423444526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C+ f ++  C++Gd C +aHg
  Zpz_sc03182.1.g00030.1.am.mk 423 PCPEFKKGAGCRRGDMCEYAHG 444
                                   8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.09E-8254337IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-9255342IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.851257328IPR020683Ankyrin repeat-containing domain
PfamPF000230.023259287IPR002110Ankyrin repeat
PROSITE profilePS500889.324293328IPR002110Ankyrin repeat
SMARTSM003569.8E-4418445IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4422446IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258423446IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.371454478IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MRYEIAATAI VPLLSPRLAT RASGMSWGLP DSTPRASLLE PARAARALAR GHPRAEYRAE  60
GTGVARSRQA TGFCCGLDDR DRGSANPHAR CGSREGDLLL PACPGPALHA TTPVHFTFYG  120
SDSTPVGPVE WRGGKKKKEN ATPGETRLPF AQEWTELARK LRPNQNLVLS KRQKPQPKVP  180
FPSLASGPLA LAAVSSNTFP DRAAPAMVVT SDAAAVSARL LELAADDDAV ALGSLLAAHP  240
SLADEPAPWY SPARGAEPMT PLMVAAAYGS VSCIDVLLSP PYLADPNRAS PSSLSTALHL  300
AAAGGAPSAP AAVSRLLAAG ADSTLLDHLH RRPSDLVSLP HNSLPLKNHL LSLLGARKEW  360
PPDPSLPDIK NGAYASDDFR MYSFKVRACS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS  420
CVPCPEFKKG AGCRRGDMCE YAHGVFESWL HPAQYRTRLC KDGVGCARRV CFFAHTAEEL  480
RPLYVSRDSS FTPPLSPSGA GNGVTGGWPQ PSLPALCLPG SAGSLHLSRL RTSLSARSMT  540
MDEMLATADY DGLGSPASVR SARGTTLVPS NLDDLFSAEV ASAAASRSPR YADQGGATFS  600
PTRKAAMLNQ FQQQQSLLSP RATAAGVNPE PVSPMSSRLL AALTQREKMQ QQTFRSMSSR  660
DLGSGASILV GSPVGSSWSK WGIPSGSGTQ DWGADDEELG RLKRSSSFEL QGGANGDEPD  720
LSWVSTLVKE PTPEKASNNG SAAMESINIL GQAATHDGIN DEEDTAGVIG SWLEQLQLDE  780
MVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14250RAARALARG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03182.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147048.20.0nucleic acid binding protein
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLC0HDR90.0C0HDR9_MAIZE; Zinc finger CCCH domain-containing protein 30
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-127CCCH-type zinc finger protein with ARM repeat domain