PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03173.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 548aa    MW: 58259 Da    PI: 7.2152
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03173.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17412446135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Zpz_sc03173.1.g00020.1.am.mk 412 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 446
                                   99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.453406442IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-18406456IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.2E-15407443IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.28E-15408469No hitNo description
CDDcd002027.75E-13411458No hitNo description
PROSITE patternPS003440412437IPR000679Zinc finger, GATA-type
PfamPF003202.2E-15412446IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MRLHTLPPRF DAAWRERPSW ARRAARAYGA EDGAAPPAGP RPDGDTRRWA QDRTTPPHMT  60
SDTEAGPARD HVARGWQPSR HRTDGERSAA GSPTWWLRGR TRGPRDVRIF QGGLPAESTW  120
LDPRSRLIAP ARKDESFISA DCAPASSSGL LHSALQRLRR VTAECRNGAV RAKKDADLFL  180
VDDLLDLPCD DDEEEEEEEV VVEGEDTKAG VVSAAAHGDG EAGAAGNASN ESSTVTALDS  240
CSNSLSGLAD EGFSGGLCEP YDQLAELEWL SNYMGEDNFP TEDLRKLELI TGVPQAGTAA  300
TKASASTPAP APAQPCGGVL PPEAAVPAKA RSKRSRITPC SWSSPLVVPP PPPASPPSPA  360
SAAISPSESG TGGTPAFSAK KPAKASKKKD SPTPPPAPTA TAAAPAGEGR RCLHCETDKT  420
PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVV SKHSNSHRKV LELRRQKEVH  480
LGGQAMPHPH PHHQHQSHLA HVGTGVGGGG LIHMPSPLLF DGPSAPLLTE DFLLHNSVLP  540
DFHHHQLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03173.1.g00020.1.am.mk
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656467.11e-123GATA transcription factor 12
TrEMBLA0A0A9PS031e-134A0A0A9PS03_ARUDO; GATA transcription factor
STRINGPavir.J33978.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-42GATA transcription factor 9