PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03142.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 632aa    MW: 68806 Da    PI: 11.0607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03142.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-174895152
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Zpz_sc03142.1.g00030.1.am.mk 48 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAARV 95
                                  57*****998.**********843...6*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.77E-154884No hitNo description
PfamPF008478.8E-124894IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1749102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2749106IPR001471AP2/ERF domain
PROSITE profilePS5103220.50849106IPR001471AP2/ERF domain
SMARTSM003805.7E-3049112IPR001471AP2/ERF domain
PRINTSPR003671.7E-95061IPR001471AP2/ERF domain
PRINTSPR003671.7E-97288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MSSEGEVYSP ASSGGATSSP PPSPTVDGGN AAARRGGEKR TRDGGRHPSY RGVRMRAWGK  60
WVSEIREPRK KSRIWLGTFP TPEMAARAHD AAARVVKGPA AQKQLPQQGD QEELEAIVEL  120
PRLDEDVAAE LVTFCASSSS SSWYCDDPAW MDDAGYVVPA APAATQDDLL FGLGPGLDGD  180
HCWTQSVGAL LWNFCPRSSP SGRPAGLVAA ATYAQRESFS TTFLVAEMKS STDPSSRYDD  240
DEDQQRVSIE PGAGVSIPTW GSILLSAPFG THTCLTMDMH AWRAAISLVP APILTSGKYA  300
CRLFAGHQID RRTLCWTFTV FRALRTTHRR LNQQLARTDR PAARVAIDRP RDRSTDRSTR  360
RRRSVELHTN THAVIIIKLA AAGAVAAVLG AQGRRARVVP GSLISNWIQS SMNWLTVRGR  420
GNEWKGSIRA HGSRTRLAIL RCMSKRLSVC SVGVFFQMRG YRRAPADQPQ QAAALPPGRW  480
EPRSPIRYVH LVTLTIPRSA AHSGRYGDGA GRPGGIVSEV TPCHHLPGGG KDRDELSQAI  540
QGHLPRQRPR RTASRRCCPE RSQATARRVK ASRPGGPGLV GSPDGRRQVI RLAGNTLARR  600
SLIYRRQARR HCSGHCCGSV SIRFPPAGDC VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1344108974Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03142.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048573e-60AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBankAP0149583e-60AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582813e-60AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1801423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-25ERF family protein