PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03091.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 491aa    MW: 51563.9 Da    PI: 4.9407
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03091.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.39.7e-3283185291
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklk 67 
                                     fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+             + + rrtra+tr+gCka+++
  Zpz_sc03091.1.g00010.1.sm.mkhc  83 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradagtgdedSGRGRRTRAVTRVGCKAMIR 161
                                     *********************************************************999999**************** PP

                            FAR1  68 vkkekdgkwevtkleleHnHelap 91 
                                     vkk+++g+w vtkle+ HnH+l p
  Zpz_sc03091.1.g00010.1.sm.mkhc 162 VKKQDNGRWSVTKLETAHNHPLIP 185
                                     *********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2983185IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MERGAGSEQG SPESEMGDGD NDSVGYGAEM EVDAGSGSAG AAPASSASAS VSASAYAART  60
GAYEGVDPFE GMEFADEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSVM SRQFVCAKEG  120
FRTYRGKNEV ARADAGTGDE DSGRGRRTRA VTRVGCKAMI RVKKQDNGRW SVTKLETAHN  180
HPLIPADQSH CLRPHKPLVQ EPKEEQSNSA EDGVHSPTWR YNSLCREALR YAEDGSSSLE  240
ALQEAANRVN MAKRGNVEGE TKSMAAAQIK EVSDHDKSLN LQSHELSQAN GNSGSSVNAL  300
NSNAAQQLVT VPIGFCPSMD GSNISAAGMN SSHPGDASSN GKVSSAQQAA THSQAKAPDS  360
IGSRGNPEGS SIRAAAIAAG ARIASPSDAA SIIKAAQSKG AIRIKPGENL PNCLKPLAPK  420
PLTSLPPVNT PNSEHPSPGH AQPGQLRFGD SAATKDAIFG SSDGSDDEYD DDTTDDDDED  480
EALTGNDAEH E
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03091.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4662010.0AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559622.31e-100protein FAR1-RELATED SEQUENCE 5
TrEMBLI1GPV55e-99I1GPV5_BRADI; Uncharacterized protein
STRINGBRADI1G13310.11e-100(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-25FAR1 family protein