PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03082.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 600aa    MW: 64147.4 Da    PI: 11.0204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03082.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.7e-19262307147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +g+W++eEde l ++v+++G ++W++I+r ++ gR++k+c++rw + 
  Zpz_sc03082.1.g00030.1.am.mk 262 KGPWSPEEDEALQRLVARHGARNWSLISRSIP-GRSGKSCRLRWCNQ 307
                                   79******************************.***********985 PP
2Myb_DNA-binding54.33.2e-17316358347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Zpz_sc03082.1.g00030.1.am.mk 316 PFTPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 358
                                   89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.597257312IPR017930Myb domain
SuperFamilySSF466891.05E-31259355IPR009057Homeodomain-like
SMARTSM007178.3E-17261310IPR001005SANT/Myb domain
PfamPF002494.7E-18262307IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-26263315IPR009057Homeodomain-like
CDDcd001672.32E-15264306No hitNo description
SMARTSM007177.1E-15313361IPR001005SANT/Myb domain
PROSITE profilePS5129420.809314363IPR017930Myb domain
PfamPF002491.9E-14316358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-23316362IPR009057Homeodomain-like
CDDcd001671.48E-11316359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MLVHDQLRRA VGVVVVHAWP CTHRKIDPVS RGGFARTNGF AGRGNCPAGG FVRRPSMPAA  60
RPLLERQAAS RDAWQVHPAA CPALVLIRSV FVVNDPRAAC LRRVGGQKLH RWIGKETRPA  120
AAAGVVGRGS ERTAFSPASP SADPADSTNV TNGFVAGRER ERDGDSQRDA ATDGTRRVSP  180
RPAVPNLCRT AVHHHARTHA HAFIHPPPTR RSVRSSSSLS ASALIYAASP SELACTSLPE  240
PPELMASPSC RGGSSKDVDR IKGPWSPEED EALQRLVARH GARNWSLISR SIPGRSGKSC  300
RLRWCNQLSP QVEHRPFTPE EDETILRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK  360
RKYYASASGA AAGGASVDLA AVAPVDEEEM RRPLKRTSSD GHPGLSFSPG SPSGSDVSDS  420
SHHSLPSVMP SSSAAPAPTS SQQQQQQQQH VYRPVPRAGG VVVLPASMAP RPPSPPPPQQ  480
PPPQAPATSL SLSLSPPGLD RPDPSPSLSP AAPPPAHVQQ HPHPSAPSQM PQPASLPFQL  540
HPPAPKPPAP APFSSEFLSM MKEMIRIEVR NYMSGSGLEP RSGADVHAAT QRMMGMAKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-372593624107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03082.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794251e-134HF679425.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB19 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151336.11e-136sucrose responsive element binding protein
TrEMBLB6TZ851e-135B6TZ85_MAIZE; Sucrose responsive element binding protein
STRINGGRMZM2G050550_P011e-136(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-61myb domain protein 73