PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02922.1.g00050.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 1205aa MW: 127691 Da PI: 9.5499

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02922.1.g00050.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.6e-06	841	862	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f ++ C++Gd C +aHg Zpz_sc02922.1.g00050.1.am.mk 841 PCPDFKKGAGCRRGDMCEYAHG 862 8****88**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00939	8.0E-80	102	373	IPR001898	Sodium/sulphate symporter
TIGRFAMs	TIGR00785	4.5E-82	119	375	IPR001898	Sodium/sulphate symporter
CDD	cd00625	6.17E-28	139	487	No hit	No description
Pfam	PF00939	1.9E-28	379	492	IPR001898	Sodium/sulphate symporter
SuperFamily	SSF48403	7.9E-8	666	754	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	9.2E-9	673	756	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	11.983	675	746	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.271	711	746	IPR002110	Ankyrin repeat
SMART	SM00356	4.1E-4	836	863	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	841	863	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.859	841	864	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	87	872	895	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.925	872	896	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006814	Biological Process	sodium ion transport
GO:0055085	Biological Process	transmembrane transport
GO:0016020	Cellular Component	membrane
GO:0005215	Molecular Function	transporter activity
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1205 aa Download sequence Send to blast
MLPTPHAITT VHPLKPHTSL HSRTSCAAAA TAAMAAATVA SPLTCHHLGQ RLHTRVPSLS 60 FPLRRRSSSS IAASASKPIS HSHSXXXSLP PLRPRLPRGA AITPLLISVA TGVLIWFIPA 120 PSGVPRNAWQ LLAIFLSTIV GIITQPLPLG AVALLGLGAA VLTRTLTFAA AFSAFGDPIP 180 WLIALAFFFA RGFIKTGLGK RVAYAFVSAF GGSSLGLGYA LVFAEAILAP AIPSVSARAG 240 GIFLPLVKSL CEACGSRSGD GTERKLGAWL MLTCFQTSVV SSAMFLTAMA ANPLSANLTA 300 GTIGQGIGWT LWAKAAIVPG LLSLVLVPLI LYVIYPPEMK SSPDAPRLAK EQLAKMGPMT 360 KQETIMAGTL LLTFVGGLGL SWQLSFGVLV LLYFYSHYFF ASGAAHIGAM FTAFLSVAKA 420 LGTPPLFAAM VMSFLSNLMG GLTHYGIGSA PVFYGAGYVP LAQWWGYGFL ISVVNIIIWL 480 GAGGFWWKMI GLCPLDATWR ARARARRWNI RLPSRHEWNG RIGCGGARSL RATGSCGRDD 540 RDPGAANPPG RVSGQLHPVV RMGATFFFTV PILPLPVAEA RRGPFEWTKL PKTEPQQKPS 600 FPLPRCLLFS GISSNTFPDR TPQAMAETSD AAAISARLLE LTADDDAASL GDLLAAHPSL 660 ADEPSPWYFP ARGAEPLTPL MVAAAYGSVS CIDVLLSPPY LADPKRTTPS SLSTSLHLAA 720 AGGAPSAPAA VSRLLAAGAD PTLLDRLQRR PSDLVTLPPN SLALKNHLLS LLGARKEWPP 780 DPSLPDIKNG AYASDDFRMY SFKVRACSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV 840 PCPDFKKGAG CRRGDMCEYA HGVFESWLHP AQYRTRLCKD GVGCARRVCF FAHTPEELRP 900 LYVSMGSRGG MEMAAAMGMG MPSPGASFTP PLSPSGAGSG VTGGWPQPSV PALCLPGSAG 960 NLHLSRPRTS LSARSMAVDE LLAAADYDGL GSPASVRSAR GKTLVPSNLD DLFSAEIAGA 1020 AASRSPRYAD QGGATFSPTR KAAMLNQFQQ QQSLLSPRTT AAGVNPEPVS PMSSRLLAAL 1080 AQREKMQQQT LRSMSSRDIS SGASILSGSG TPDWGTDEEE LGRLKRSSSF ELQSGANGDE 1140 PDLSWVNTLV KEPTPEKAST NTTTAKQSIG ILGQAASNDC INGEEATAGV IGGWLEQLQL 1200 DEMVV

Sequence ? help Back to Top

Protein Sequence Length: 1205 aa Download sequence Send to blast

MLPTPHAITT VHPLKPHTSL HSRTSCAAAA TAAMAAATVA SPLTCHHLGQ RLHTRVPSLS  60
FPLRRRSSSS IAASASKPIS HSHSXXXSLP PLRPRLPRGA AITPLLISVA TGVLIWFIPA  120
PSGVPRNAWQ LLAIFLSTIV GIITQPLPLG AVALLGLGAA VLTRTLTFAA AFSAFGDPIP  180
WLIALAFFFA RGFIKTGLGK RVAYAFVSAF GGSSLGLGYA LVFAEAILAP AIPSVSARAG  240
GIFLPLVKSL CEACGSRSGD GTERKLGAWL MLTCFQTSVV SSAMFLTAMA ANPLSANLTA  300
GTIGQGIGWT LWAKAAIVPG LLSLVLVPLI LYVIYPPEMK SSPDAPRLAK EQLAKMGPMT  360
KQETIMAGTL LLTFVGGLGL SWQLSFGVLV LLYFYSHYFF ASGAAHIGAM FTAFLSVAKA  420
LGTPPLFAAM VMSFLSNLMG GLTHYGIGSA PVFYGAGYVP LAQWWGYGFL ISVVNIIIWL  480
GAGGFWWKMI GLCPLDATWR ARARARRWNI RLPSRHEWNG RIGCGGARSL RATGSCGRDD  540
RDPGAANPPG RVSGQLHPVV RMGATFFFTV PILPLPVAEA RRGPFEWTKL PKTEPQQKPS  600
FPLPRCLLFS GISSNTFPDR TPQAMAETSD AAAISARLLE LTADDDAASL GDLLAAHPSL  660
ADEPSPWYFP ARGAEPLTPL MVAAAYGSVS CIDVLLSPPY LADPKRTTPS SLSTSLHLAA  720
AGGAPSAPAA VSRLLAAGAD PTLLDRLQRR PSDLVTLPPN SLALKNHLLS LLGARKEWPP  780
DPSLPDIKNG AYASDDFRMY SFKVRACSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV  840
PCPDFKKGAG CRRGDMCEYA HGVFESWLHP AQYRTRLCKD GVGCARRVCF FAHTPEELRP  900
LYVSMGSRGG MEMAAAMGMG MPSPGASFTP PLSPSGAGSG VTGGWPQPSV PALCLPGSAG  960
NLHLSRPRTS LSARSMAVDE LLAAADYDGL GSPASVRSAR GKTLVPSNLD DLFSAEIAGA  1020
AASRSPRYAD QGGATFSPTR KAAMLNQFQQ QQSLLSPRTT AAGVNPEPVS PMSSRLLAAL  1080
AQREKMQQQT LRSMSSRDIS SGASILSGSG TPDWGTDEEE LGRLKRSSSF ELQSGANGDE  1140
PDLSWVNTLV KEPTPEKAST NTTTAKQSIG ILGQAASNDC INGEEATAGV IGGWLEQLQL  1200
DEMVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02922.1.g00050.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-125	CCCH-type zinc finger protein with ARM repeat domain