PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02892.1.g00060.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 496aa    MW: 52205.1 Da    PI: 9.8734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02892.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-08379409436
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapsk 36 
                                   +h+ +Er RR++iN ++e L+el+P +s  +++
  Zpz_sc02892.1.g00060.1.sm.mk 379 SHSLAERARREKINARMELLKELVPGCS--KCG 409
                                   8************************974..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-7373408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-6373411No hitNo description
PROSITE profilePS5088810.683375441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-8378406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5379408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MTAQEDRRAT SGLPRAGLDG WIATRRGATW HEDGGRLICN PESCWCVYRW DLPKKPKPKL  60
STGARTWAVA IGSWTRGKKT TTTSAAADAA APAGFCCCTS GAEGSIPSGR ATSLKKSAHA  120
GRALKAASQV TAVHHSSLPE MFSTIHSVYR VRSVEPIPLP FFPRPLATPP HLSAAASYKC  180
RRCLAPPLPP PPLFLSSQRP PTSPASAAPM HHPSPPPQEP PVSRAEIQAL IPASSSAEPS  240
SATSTTTASG GGGGSFTALL GLPTSQAMEL LLPGAAPPAP APAPAFPSDP HLGDCAARFS  300
AFASPSSSSP TPRPPPPPPP VAANAKRKAD PADRSSKVGK AAKKGKTAAD ETKPAGGDGE  360
DEKPAYVHVR ARRGQATDSH SLAERARREK INARMELLKE LVPGCSKCGR LAGLNCKNGI  420
DLEQVTWPEM GVHGARHFMQ LQQQFWHGEL AHPNQVASQW EKRDDGHPPV FSNSSSSLFG  480
YDLTSSDQAK TSPVIC
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02892.1.g00060.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407295e-80BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347160.11e-107uncharacterized protein LOC100273300
TrEMBLA0A1D6P4V31e-106A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G378653_P021e-112(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.11e-21bHLH family protein