PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02837.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 510aa    MW: 56090.9 Da    PI: 10.8753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02837.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-17205252148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Zpz_sc02837.1.g00060.1.am.mk 205 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 252
                                   79******************************99************97 PP
2Myb_DNA-binding513.3e-16258302147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T +Edel+++++  lG++ W++Ia  ++ gRt++++k++w+++
  Zpz_sc02837.1.g00060.1.am.mk 258 RGNFTDDEDELIIRLHGVLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 302
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-23196255IPR009057Homeodomain-like
PROSITE profilePS5129417.186200252IPR017930Myb domain
SMARTSM007177.6E-14204254IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-28204299IPR009057Homeodomain-like
PfamPF002494.0E-15205252IPR001005SANT/Myb domain
CDDcd001676.25E-11207252No hitNo description
PROSITE profilePS5129427.338253307IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-26256307IPR009057Homeodomain-like
SMARTSM007171.6E-15257305IPR001005SANT/Myb domain
PfamPF002494.1E-14258302IPR001005SANT/Myb domain
CDDcd001674.36E-11260303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAPNHVLNYC LDRAISIHPF QPTVAAHREL IERVAVFLGF RSRIFSCAVL HIRHRQHATR  60
TNLPSFALLQ LITGSAATAG TEHQTERKWC GRTRGLHSTP RRAPHRNHRQ RQPLLLPDRS  120
QPNSNPPAHV KLARKTPSGR SIYRQIEKPG RARAPYIRAP RASSETGNLC SLARAPRGPA  180
GSQACDCERE SMGRSPCCEK AHTNKGAWTK EEDERLVAYI RAHGEGCWRS LPKAAGLLRC  240
GKSCRLRWMN YLRPNLKRGN FTDDEDELII RLHGVLGNKW SLIAGQLPGR TDNEIKNYWN  300
THIKRKLLAR GVDPQTHRPL SAVSAAPRAV AAVTTALLPP VMTVPAAPTF AARAVESSSD  360
DGGRSSNSSS SGGSTGEPPR CPDLNLDLSV GLPVVDTPTS PRPVCLCYRL GLRDGQACSC  420
QGTQRFTIQS VLQEEQDEIA FKRWRPASRG GRTWMRVATP DKPATDAVSG CGAMLRGGRE  480
ERIWRHEIGS RAVAGGGGWW TAAVTRLVSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-272053077108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02837.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3725211e-170EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds.
GenBankHF6794281e-170HF679428.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB22 protein.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4434833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-83myb domain protein 4