PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02836.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 163aa    MW: 17616.8 Da    PI: 9.0036
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02836.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.7e-1880113134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   C++C+  +Tp+WR gp g+ktLCnaCG++y++ +
  Zpz_sc02836.1.g00010.1.am.mk  80 CTHCQIESTPQWRAGPLGPKTLCNACGVRYKSGR 113
                                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.61E-1573136No hitNo description
PROSITE profilePS5011411.54374110IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-1574124IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.7E-1578111IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.40E-1479136No hitNo description
PfamPF003206.8E-1680114IPR000679Zinc finger, GATA-type
PROSITE patternPS00344080105IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
AVEPPTILVP TPMYSAASSH SDPESIAESN PDPAPPKKKK KAKKPAPAPA ASDAEGDADG  60
DADYVEGGER SWPQGAVRRC THCQIESTPQ WRAGPLGPKT LCNACGVRYK SGRLFPEYRP  120
AASPTFVPSI HSNSHKKVVE MRQKAVRSGD PSCDLLQFIR RRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02836.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542691e-157BT054269.1 Zea mays full-length cDNA clone ZM_BFb0206G24 mRNA, complete cds.
GenBankBT0557551e-157BT055755.1 Zea mays full-length cDNA clone ZM_BFb0170C21 mRNA, complete cds.
GenBankBT0670671e-157BT067067.1 Zea mays full-length cDNA clone ZM_BFb0175B18 mRNA, complete cds.
GenBankEU9676751e-157EU967675.1 Zea mays clone 305252 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807686.12e-89GATA transcription factor 8-like
RefseqXP_025807694.12e-89GATA transcription factor 8-like
SwissprotO826327e-37GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A2T7FDI54e-88A0A2T7FDI5_9POAL; Uncharacterized protein
TrEMBLA0A2T8KYD85e-88A0A2T8KYD8_9POAL; Uncharacterized protein
STRINGPavir.Ab03246.1.p1e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.27e-39GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]