PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02762.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 439aa    MW: 46162.4 Da    PI: 7.1783
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02762.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1054.8e-33189244359
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                                    v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkCaACgCHRnFHR+ev++
  Zpz_sc02762.1.g00040.1.am.mk 189 VVKYRECLKNHAAAMGGNATDGCGEFMPS-GEEGSLEALKCAACGCHRNFHRKEVDD 244
                                   589*************************9.999*********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.7E-30190242IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-24191243IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-30191242IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.086192241IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-17289359IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-27291360IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-25300356IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MLAPMAEAAE PGYLAPRPCF FVLTQQHGSS SSMFLCVWSQ ERRAKNRRGS MDLSGNQGEL  60
PIPMQAPASP NASGLVLLPS PPAAATEELG NNNNGTEALV LLPSPPAAAM EEEYGNNKNG  120
NEAAPVLLPS PPAAATEEEQ GNNNNGNEAP VLLPSPPAAA ATEEEESSGL KKPAAVSVTG  180
AIGTGAGPVV KYRECLKNHA AAMGGNATDG CGEFMPSGEE GSLEALKCAA CGCHRNFHRK  240
EVDDDAGHGN GCSYGHRFTD PYAAMHAPPP LHHHQLVNAV PLSAVHTAEP GARGSASSMK  300
RFRTKFSAEQ KARMLAFAER AGWRLTNVDE GAVQAFCQEI GVRRPVLKVW MHNNKYTLRS  360
KRLQAPPVAA AAASPPSPPP PQILMPMVPP PPPPSSPQHE GLAFVHLGGP SSPPPPQQMM  420
MPMAPPFRRS PGSPPLKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-232983551673ZF-HD homeobox family protein
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02762.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126198e-63CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A453HGU95e-68A0A453HGU9_AEGTS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-53homeobox protein 22