PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02751.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WOX | ||||||||
Protein Properties | Length: 255aa MW: 27234.8 Da PI: 9.7159 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.9 | 1.5e-07 | 58 | 76 | 39 | 57 |
S-HHHHHHHHHHHHHHHHC CS Homeobox 39 LterqVkvWFqNrRakekk 57 + +++V++WFqNrR + ++ Zpz_sc02751.1.g00020.1.am.mk 58 VRDANVFYWFQNRRSRSRR 76 6789************997 PP | |||||||
2 | Wus_type_Homeobox | 41.1 | 4.2e-14 | 54 | 77 | 41 | 64 |
Wus_type_Homeobox 41 eyGkiedkNVfyWFQNrkaRerqk 64 ++G+++d+NVfyWFQNr++R+r++ Zpz_sc02751.1.g00020.1.am.mk 54 RFGAVRDANVFYWFQNRRSRSRRR 77 7*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.38E-6 | 54 | 83 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 56 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.4E-5 | 58 | 76 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKSPATCPSQ QHRNPRRAPT GSPKRGQLIL PNFAVLPVRT SSTLTHALTP GRPRFGAVRD 60 ANVFYWFQNR RSRSRRRARQ LQQACGAAAQ LPSAAVIHGV NDSASHYVMH GHGLARTGSV 120 PTSAPVQSAA AAAPHFFADD VDGGDDLFAI SRQMGLLPRG DDHRCGYTAN DVSAQLSYHQ 180 PTATATTSIQ VFINGVVYEV PGGGALLDLA GTFGRDAVLV HSSGEILPVN EQGILMKSLQ 240 MGECYYLVGT IIGLH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02751.1.g00020.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107305 | 8e-37 | AK107305.1 Oryza sativa Japonica Group cDNA clone:002-126-D01, full insert sequence. | |||
GenBank | AP005249 | 8e-37 | AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21. | |||
GenBank | AP014964 | 8e-37 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 8e-37 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683622.1 | 2e-89 | WUSCHEL-related homeobox 10 | ||||
Swissprot | A2YST1 | 2e-59 | WOX10_ORYSI; WUSCHEL-related homeobox 10 | ||||
TrEMBL | A0A1E5VIR5 | 8e-95 | A0A1E5VIR5_9POAL; WUSCHEL-related homeobox 10 | ||||
STRING | Si015065m | 4e-88 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 9e-18 | WUSCHEL related homeobox 11 |