PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02720.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 200aa    MW: 21104.4 Da    PI: 4.8886
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02720.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-06443538
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                     C+ +  + ++ fC  ++  lC+ C    H+       H+
  Zpz_sc02720.1.g00020.1.sm.mkhc  4 QCDVCAAEAASVFCCADEAALCDACDRRVHSAnkvagkHR 43
                                    7**************************9996566666666 PP
2zf-B_box30.48.1e-1063105238
                        zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                                     +++ C+ ++ek+  lfC++++  lC+dC ++ H        Ht
  Zpz_sc02720.1.g00020.1.sm.mkhc  63 SPPLCDICQEKRGLLFCKEDRAILCRDCDVSVHTAskltmrHT 105
                                     5789*****************************5566777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.883147IPR000315B-box-type zinc finger
SMARTSM003361.3E-10147IPR000315B-box-type zinc finger
CDDcd000215.88E-5339No hitNo description
PfamPF006431.5E-5444IPR000315B-box-type zinc finger
SMARTSM003365.1E-1562109IPR000315B-box-type zinc finger
PROSITE profilePS5011910.16862109IPR000315B-box-type zinc finger
PfamPF006436.4E-864105IPR000315B-box-type zinc finger
CDDcd000211.44E-765109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHSANKVAG KHRRFSLLSP TTSSSSGSAD  60
QQSPPLCDIC QEKRGLLFCK EDRAILCRDC DVSVHTASKL TMRHTRFLLT GVRLSAEPAA  120
SPAPPSEDED TRGSFCCSAG DAAPPAPATS HGSDSSSISE YLTKTLPGWH VEDFLVDEAA  180
AAASATTVGV YADASYHQED
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02720.1.g00020.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008711e-171FP100871.1 Phyllostachys edulis cDNA clone: bphyem121a23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792349.11e-94B-box zinc finger protein 20-like
SwissprotQ9LQZ72e-54BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A3L6QKL31e-96A0A3L6QKL3_PANMI; B-box zinc finger protein 20-like
STRINGSi018081m2e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-38salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]