PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02591.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 542aa    MW: 57986.9 Da    PI: 10.2928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02591.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19235284255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +++GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAaka+++a+ +++g
  Zpz_sc02591.1.g00120.1.am.mk 235 RFRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAAKAYDRAAVEFRG 284
                                   69*******.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-12235284IPR001471AP2/ERF domain
PROSITE profilePS5103224.658235292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-30235292IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21235293IPR016177DNA-binding domain
SMARTSM003801.8E-36235298IPR001471AP2/ERF domain
PRINTSPR003673.1E-10236247IPR001471AP2/ERF domain
CDDcd000181.39E-25238292No hitNo description
PRINTSPR003673.1E-10258274IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSSVNSRDPT PLAFTLPRIH LEAKNGIRKK TEDGRRARFS RLSRALSTQR QRYSPRPLRR  60
DPRIKAPAPP ASSRSIQASA TTRNADNRMT NRTFLPSPSM AASAANQDYV IRFDGQFDDP  120
SPSSSSGREP PPPPFAWRPI TPEREHAVIV AALLHVVSGY TTPPPEVFPA AQVEASTSCR  180
VCGMERCLGC EFFAADACSA GADAAENAVV TATATTTARA GGTGTHRRRR KKKNRFRGVR  240
QRPWGKWAAE IRDPRRAVRK WLGTFDTAEE AAKAYDRAAV EFRGPRAKLN FPFPEHQAAL  300
TTAHDAAAAK SSDTQSPCSA DVEDRSGPQD WAPRGGEEAG ELWDDLQDLI RLDEAEICAR  360
FFYPATAVPT ASKAREDEGD ACVILVGVVV LLVPASTGRK WQAAHRGEGD GGAASGACRQ  420
QSSPVTAAPL VRQLGGSGHQ DGVKRTAAHR GEGDGGAASG ACRQQSSPVT AAPLVRQLGG  480
SGHQDGVKRT GGCVPAGQVV EMRRGQLEGR PHQPRFQLGR RWPPPPLGLP GPAGDQGCAH  540
SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19232293264ATERF1
3gcc_A1e-19232293264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226232RRRRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02591.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9644535e-74EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973673.18e-97ethylene-responsive transcription factor ERF109
TrEMBLK3YJ182e-95K3YJ18_SETIT; Uncharacterized protein
STRINGSi014237m3e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-17redox responsive transcription factor 1