PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02489.1.g00030.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 967aa MW: 102657 Da PI: 11.0929

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02489.1.g00030.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.2	1.6e-11	797	836	14	56
AP2 14 rWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 WvAeIr p++ r+r +lg+f++ae+Aa a+++ + kl+ge Zpz_sc02489.1.g00030.1.am.mk 797 GWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRGE 836 5*****955...5************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	16.792	779	843	IPR001471	AP2/ERF domain
CDD	cd00018	3.21E-20	793	844	No hit	No description
SMART	SM00380	1.7E-21	794	849	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.94E-15	796	844	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.9E-21	797	844	IPR001471	AP2/ERF domain
Pfam	PF00847	6.5E-5	798	836	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MPRYLSNWLL DAGARASARL AENDVVKAWV GRVGGGWYRP ERLRCPPRPT ENMCDVSLSK 60 HGLWIYRAQP PGERKKRHGR HGTRQRGCQL TCCHRKTVAC LETTAGLFWS PGRVALVAVG 120 QALPYLNLVL TSSRRPKLAL ASTSRGGSSL LAYEDAHGSI IDSFLCGVHV DVLRASGRPQ 180 PKSSRHSQKR AHTASSGKVN ALPAPPAYVA TADRSERARN RSALGSTAPT ATARAGRLCA 240 RGCAVAATST TQTIQCRKGS GCGRTGRPRT PSCLTAVAGE GGWAVSAPVS FPSSLATPTD 300 VGFCNAIVDF VGSGLGVEEE AKISGASSWS RPFAGRRKRC HAGAEVRVML PKGEVRSMPL 360 RRPISSFSSY LIGKNMELSP ALGGHTSRIR RTPITVVASN HIVLGGGGGY RRTAALRLRI 420 GCRNRAGVRS YGRRPESVDV DDIYFVRSYA KGGITQAQAL LLPGWLTATG NTPLRFVHAM 480 TCRDQGITTV TGSCGAGHRP GIVSLAHSAA SAPHFFFLSS PNAVMLWHQK QNATTRTPAP 540 RAASGRLPAD RFITGSSFAS PRSKLASASV SLRALAIASI ELEMEGSSGS SDSSGGGTGG 600 AGGRGRRWKG KDITPIQPRR QLAPVIEEAS VASLRPLRKI GRPSDRLQRS ASSLSKYSSS 660 SSAPPSPRSS AISSSAPSGR YIFPFAYEPS TPAGGPLPAW QQSSSASQPA SPQQQKPRPS 720 LQRQGQQMIS FGAPPPQYEA QLLRPESAQQ QQQMLRYWSE ALNLSPRGGQ AGGGVLPSLY 780 QHLMRAPPPP PQKLYRGWVA EIRLPRNRTR LWLGTFDSAE DAAMAYDREA FKLRGENARL 840 NFPDRGRTSA SSAAASAALG AGGSVDKQTT QPLVAASSAQ EGSSSDMAMP HSAEMFHAPM 900 ASGSDWGPAD EACARGLFLH GRFATDEAGM ERSNAQETTA TNAAATGTDM ACDHVPPTPP 960 DTSNFKS

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MPRYLSNWLL DAGARASARL AENDVVKAWV GRVGGGWYRP ERLRCPPRPT ENMCDVSLSK  60
HGLWIYRAQP PGERKKRHGR HGTRQRGCQL TCCHRKTVAC LETTAGLFWS PGRVALVAVG  120
QALPYLNLVL TSSRRPKLAL ASTSRGGSSL LAYEDAHGSI IDSFLCGVHV DVLRASGRPQ  180
PKSSRHSQKR AHTASSGKVN ALPAPPAYVA TADRSERARN RSALGSTAPT ATARAGRLCA  240
RGCAVAATST TQTIQCRKGS GCGRTGRPRT PSCLTAVAGE GGWAVSAPVS FPSSLATPTD  300
VGFCNAIVDF VGSGLGVEEE AKISGASSWS RPFAGRRKRC HAGAEVRVML PKGEVRSMPL  360
RRPISSFSSY LIGKNMELSP ALGGHTSRIR RTPITVVASN HIVLGGGGGY RRTAALRLRI  420
GCRNRAGVRS YGRRPESVDV DDIYFVRSYA KGGITQAQAL LLPGWLTATG NTPLRFVHAM  480
TCRDQGITTV TGSCGAGHRP GIVSLAHSAA SAPHFFFLSS PNAVMLWHQK QNATTRTPAP  540
RAASGRLPAD RFITGSSFAS PRSKLASASV SLRALAIASI ELEMEGSSGS SDSSGGGTGG  600
AGGRGRRWKG KDITPIQPRR QLAPVIEEAS VASLRPLRKI GRPSDRLQRS ASSLSKYSSS  660
SSAPPSPRSS AISSSAPSGR YIFPFAYEPS TPAGGPLPAW QQSSSASQPA SPQQQKPRPS  720
LQRQGQQMIS FGAPPPQYEA QLLRPESAQQ QQQMLRYWSE ALNLSPRGGQ AGGGVLPSLY  780
QHLMRAPPPP PQKLYRGWVA EIRLPRNRTR LWLGTFDSAE DAAMAYDREA FKLRGENARL  840
NFPDRGRTSA SSAAASAALG AGGSVDKQTT QPLVAASSAQ EGSSSDMAMP HSAEMFHAPM  900
ASGSDWGPAD EACARGLFLH GRFATDEAGM ERSNAQETTA TNAAATGTDM ACDHVPPTPP  960
DTSNFKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02489.1.g00030.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107680	2e-53	AK107680.1 Oryza sativa Japonica Group cDNA clone:002-132-A07, full insert sequence.
GenBank	AL662976	2e-53	AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence.
GenBank	AP014960	2e-53	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	2e-53	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855230	2e-53	CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3691	32	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20880.1	9e-26	ERF family protein