PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02451.1.g00100.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 869aa    MW: 95874.3 Da    PI: 6.2833
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02451.1.g00100.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP110.31.2e-34185260176
                                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                                     +Cqv++Cead+ e+k yhrrh+vC  +++a++vl++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  Zpz_sc02451.1.g00100.1.sm.mkhc 185 RCQVPECEADIRELKGYHRRHRVCLRCAHAAAVLLDGVQKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNKRRRRK 260
                                     6************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-26182247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.145183260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-32184264IPR004333Transcription factor, SBP-box
PfamPF031104.7E-26186260IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MDAPDSGGGG VDAGEPVWDW GNLLDFVVQD DDSLVLPWDD VAGTEAAGPT EAGASLLATP  60
PPQPAEVEAN QEPEPEPEPV LPPLPLHVQG IGRRVRKRDP RLVCPNYLAG RVPCACPEVD  120
EMAAAAEVED VATELLAGAR KKVKTAGRRG KAGAVGGAGG SGGGVSTTGG GSGGGGRAVV  180
AAEMRCQVPE CEADIRELKG YHRRHRVCLR CAHAAAVLLD GVQKRYCQQC GKFHVLLDFD  240
EDKRSCRRKL ERHNKRRRRK PDSKVPFEKE MDEHLDLSAD VSGDGELREE NIECTTSEML  300
ETVLSNKVLD RETPMGSEDV LSSPTCTQPN LQNEQSKSIV TFTASVEASS GAKQESVKLN  360
NSPIHDLKTA YSSSCPTGRI SFKLYDWNPA EFPRRLRHQI FEWLASMPVE LEGYIRPGCT  420
ILTVFIAMPQ HMWDKLSDDT ANLLRNLVNY PNSLLLGKGN FFIHIDNMIF QVLKDGATLM  480
STRLEMQAPR IHYVHPTWFE AGKPVELFIC GSSLDQPKFR SLLSFDGNYL KHDCCRVASL  540
DAFDCVEKDD LKLDSQHEMF RISISGSRPD TQGPAFVEVE NMFGLSNFVP ILFGSKQLCS  600
ELAKIQDVLC GSCKNIDIFE EFPSASSDPC ECKKVKSAAM SGFLIDIGWL IRKPSSEEFK  660
NVLSLTNIQR WVYMLKFLIQ NDFLNVLEII VKSMDNFIGS EILSNLEKGR LEDHVTTFLA  720
YLNHARSIVN QKAKHGEETQ LEKRLVTDKF PKHQSLGTSV PLDKGKTTGL GCHNDLLLTS  780
AACEEEVTMP LMTKDATHRQ CCHPDISARW LKHSRVNTFP GGATRTRLLI TVAVAAVLCF  840
TACVTLFHPH RIEVLAAPVK RYLSGDSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A6e-37185264584squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242260KRSCRRKLERHNKRRRRKP
2246258RRKLERHNKRRRR
3253260NKRRRRKP
4254259KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02451.1.g00100.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656292.20.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A1D6FQB10.0A0A1D6FQB1_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
STRINGGRMZM2G109354_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-144squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]