PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02185.1.g00090.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 204aa MW: 22490.7 Da PI: 11.1243 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.9 | 6.8e-19 | 75 | 109 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+tt Tp+WR gp g+++LCnaCG++yrkk++ Zpz_sc02185.1.g00090.1.sm.mkhc 75 CVECRTTATPMWRGGPTGPRSLCNACGIRYRKKRR 109 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.0E-15 | 69 | 128 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.61E-13 | 70 | 110 | No hit | No description |
CDD | cd00202 | 1.67E-12 | 74 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.1E-15 | 74 | 110 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 75 | 100 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.4E-17 | 75 | 109 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.176 | 75 | 105 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
SKDSPPRPSY PFPQPPSPLS RQLTYVVAKK QSEISSAAPG PRRDLQARIG GLMDSAEHKV 60 IGIGVVVPEE RRPFCVECRT TATPMWRGGP TGPRSLCNAC GIRYRKKRRQ ELGLDNKQQP 120 KQQAQQQQQQ RQPQPPPQPP QQLQGQQDLR RDLSEATSAV NSSTKSTSGL QVVKKRRVLM 180 GVEEAAILLM ALSSSSRSPT LLHG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02185.1.g00090.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728012 | 3e-40 | KJ728012.1 Zea mays clone pUT6147 C2C2-GATA transcription factor (GATA12) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655008.1 | 2e-46 | PREDICTED: GATA transcription factor 23-like | ||||
Refseq | XP_015692844.1 | 2e-46 | PREDICTED: GATA transcription factor 23-like | ||||
TrEMBL | A0A3L6REC3 | 5e-50 | A0A3L6REC3_PANMI; GATA transcription factor 23-like | ||||
STRING | OB05G13650.1 | 6e-46 | (Oryza brachyantha) | ||||
STRING | Sb09g004315.1 | 1e-45 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6721 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 2e-19 | GATA transcription factor 23 |