PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02128.1.g00060.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 234aa MW: 26009.3 Da PI: 9.9563

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02128.1.g00060.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.4e-14	93	137	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ +++d+ k lG+g+W+ I++ + ++Rt+ q+ s+ qky Zpz_sc02128.1.g00060.1.sm.mkhc 93 PWTEKEHRKFLDGLKHLGKGDWRGISKNFVTTRTATQVASHAQKY 137 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.451	86	142	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-17	87	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-18	89	141	IPR006447	Myb domain, plants
SMART	SM00717	2.6E-10	90	140	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-11	90	136	IPR009057	Homeodomain-like
CDD	cd00167	6.61E-9	93	138	No hit	No description
Pfam	PF00249	1.5E-11	93	137	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEWRGPDEGR TQALPPVSFR LFGTDVRLPG EEADEDAGPV EMKKCSSMPN LTYNRLLPTG 60 EVGKRYASDD GDLATPQQKR RRRKAQERKK GVPWTEKEHR KFLDGLKHLG KGDWRGISKN 120 FVTTRTATQV ASHAQKYFLR QTNPGKKKRR ASLFDVGITD YNNDQVLGSE NIANKPAPTE 180 EIIHTDRGDV PRTKAHAESS FASMACGLEP ASSISSLDLS IEPPRGAAEP IKVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	83	KRRRRK
2	78	89	KRRRRKAQERKK
3	79	89	RRRRKAQERKK
4	145	149	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02128.1.g00060.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251610	2e-90	AK251610.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129a20, mRNA sequence.
GenBank	AK362457	2e-90	AK362457.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2005J10.
GenBank	AK370274	2e-90	AK370274.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108A12.
GenBank	AK373165	2e-90	AK373165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022M03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983632.1	7e-93	transcription factor MYBS2
Swissprot	B8BI93	4e-70	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	4e-70	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A0A9KKT0	1e-104	A0A0A9KKT0_ARUDO; Uncharacterized protein
STRING	Si036966m	3e-92	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	7e-31	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]