PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02094.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 735aa    MW: 79065.9 Da    PI: 10.0971
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02094.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-19282341357
                                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                    R+++tkeq+ +Le l+e+  r+psae+++++A++l     ++ ++V++WFqN++a++++
  Zpz_sc02094.1.g00090.1.am.mk 282 ARWNPTKEQVAVLEGLYENgVRTPSAEQIQHIAARLrdhgPIEAKNVFYWFQNHKARDRQ 341
                                   6*****************99******************999****************996 PP
2Wus_type_Homeobox105.72.9e-34282343465
             Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                   +RW+Pt+eQ+ +Le ly++G+rtP++e+iq+i+a+L+ +G ie kNVfyWFQN+kaR+rqkq
  Zpz_sc02094.1.g00090.1.am.mk 282 ARWNPTKEQVAVLEGLYENGVRTPSAEQIQHIAARLRDHGPIEAKNVFYWFQNHKARDRQKQ 343
                                   7***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.0E-5279346IPR001356Homeobox domain
SuperFamilySSF466891.8E-12282349IPR009057Homeodomain-like
PfamPF000468.3E-17282341IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-8282341IPR009057Homeodomain-like
CDDcd000862.22E-7283343No hitNo description
PROSITE profilePS5007110.641287342IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MPLAISIPTY GLWLLPYVPY SEAVGVMCPA AALQETGETG IRMKLATQSD RLLSEMIERP  60
LPGAGTSKEF PFIPKAIYPA SCCSTRAAPL RCATLRPVQL PLVFRAGAEP HDMLASLLFS  120
RLIICVHCNV ATSTETILRF RLLTPPPPMT PHPVGPADAA PTSTMLRYLS CDTVRGSTAL  180
HAATRVFCPG IAAPLAIAAR CQPRPHRNAA AVTLNAHATA SPRSSCCPES RFPAPGRKRD  240
RETLAMETPQ GGVHGEAAGA GSPSDARVSP PLSPASAALL NARWNPTKEQ VAVLEGLYEN  300
GVRTPSAEQI QHIAARLRDH GPIEAKNVFY WFQNHKARDR QKQKQESFAY FTRLLHRTPP  360
LPVIIRPPGP PYPHLGRVPA SPPVLTMAPP AAAACNNGGD GGGNHVMYRA PYYMPPPPPP  420
PPPPPEASAA NAGYYNLQQA HHRAVMYPRM DITQDKQMHQ AGMYHATPYG PSHVAPAKRG  480
GADGGASADQ HAGRSRETLE LFPLRPTFVP PDNKARGAAS LTSPAQLTAS ASFSGGESES  540
LVDSPKSDAV APLPFYDFFG LQGRAGILWT SRLRTPPFPE LRAPVFVGYL RAGACVLSGR  600
RGFENVPPRG DQPLDSHRRD VREESGWRGS GNWTNNNVTS GSSANGVGGR GHSGRRRRRR  660
PCDGFLPLVA STVRASFPSI SAGGRSFSST GAVDRTIGVR RDTRDFAPTA DRSDRFLSVA  720
LWTGPQHYWW PPGHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1654659RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02094.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902352e-83AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene).
GenBankBT0370092e-83BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds.
GenBankEU9540622e-83EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds.
GenBankKJ7283842e-83KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-34WUSCHEL related homeobox 2