PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01996.1.g00040.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 256aa MW: 28160.2 Da PI: 6.5142

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01996.1.g00040.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	28	80	4	52
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52 ++t+eq+e+Le++++++++p+ ++r++L +++ +++ +q+kvWFqNrR Zpz_sc01996.1.g00040.1.sm.mkhc 28 YVRYTPEQVEALERVYAECPKPTSARRQQLLRECpilaNIEPKQIKVWFQNRR 80 6789************************************************* PP
2	START	56.9	6.7e-19	173	233	140	200
TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHT CS START 140 ssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatl 200 +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++l++l++s+++ ++k++ a l Zpz_sc01996.1.g00040.1.sm.mkhc 173 QQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLQPLYESSRVVAQKMTAAYL 233 579***************************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-17	7	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.847	22	80	IPR001356	Homeobox domain
SMART	SM00389	7.2E-12	24	90	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-14	27	80	IPR009057	Homeodomain-like
CDD	cd00086	7.11E-16	27	80	No hit	No description
Pfam	PF00046	2.7E-15	28	80	IPR001356	Homeobox domain
SuperFamily	SSF55961	2.06E-12	83	219	No hit	No description
PROSITE profile	PS50848	10.49	155	221	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	3.2E-5	172	215	IPR023393	START-like domain
Pfam	PF01852	3.7E-16	173	233	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MAAAVAMRSG SSDGGGGYEK GGMDTGKYVR YTPEQVEALE RVYAECPKPT SARRQQLLRE 60 CPILANIEPK QIKVWFQNRR LLSIAEETLT EFVSKATGTA IDWVQMPGMK ATWSGFIVEI 120 LKDRPSWFRD CRSLEVFTMF PAGNGGTIEL VYMQVCERSL SGSGGGQSAA SPQQFVRAEM 180 LPSGYLVRPC EGGGSIVHIV DHLDLEAWSV PEVLQPLYES SRVVAQKMTA AYLLSQFGAI 240 TFRPLLAELH GTYSHA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269\|PubMed:10559440, ECO:0000269\|PubMed:11169198, ECO:0000269\|PubMed:11402186, ECO:0000269\|PubMed:15111711, ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:22781836, ECO:0000269\|PubMed:7555701}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01996.1.g00040.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269\|PubMed:15111711, ECO:0000269\|PubMed:17237362, ECO:0000269\|PubMed:20807212}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ013803	8e-65	DQ013803.1 Phyllostachys praecox HB1 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027343900.1	2e-80	homeobox-leucine zipper protein ATHB-15 isoform X3
Swissprot	Q9SE43	3e-73	REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBL	A0A1E5V2R5	3e-83	A0A1E5V2R5_9POAL; Homeobox-leucine zipper protein HOX10
STRING	Sb01g050000.1	5e-77	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18491	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60690.1	4e-68	HD-ZIP family protein

Publications ? help Back to Top
Lian H,Li X,Liu Z,He Y HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis. J. Exp. Bot., 2013. 64(11): p. 3397-410 [PMID:23918970] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Baima S, et al. Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module. Mol Plant, 2014. 7(6): p. 1006-1025 [PMID:24777988] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Roodbarkelari F,Du F,Truernit E,Laux T ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response. BMC Biol., 2015. 13: p. 74 [PMID:26358077] Shi B, et al. Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis. PLoS Genet., 2016. 12(7): p. e1006168 [PMID:27398935]