PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01988.1.g00090.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 649aa MW: 70054 Da PI: 10.5508

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01988.1.g00090.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.1	2.6e-17	39	98	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+++t eq+ +Le+l+e ++p+a+++++++ +l ++ ++V++WFqN++a+++ Zpz_sc01988.1.g00090.1.am.mk 39 NTRWNPTMEQVAVLERLYEHgVSTPTADQIQHITGRLrehgPIEAKNVFYWFQNHKARDR 98 58***************99**************999**************98 PP
2	Wus_type_Homeobox	103.7	1.3e-33	38	101	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW+Pt eQ+ +Le+ly++G+ tP++++iq+it +L+e+G ie kNVfyWFQN+kaR+r kq Zpz_sc01988.1.g00090.1.am.mk 38 QNTRWNPTMEQVAVLERLYEHGVSTPTADQIQHITGRLREHGPIEAKNVFYWFQNHKARDRSKQ 101 689**********************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.414	35	100	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-6	36	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.13E-10	37	106	IPR009057	Homeodomain-like
SMART	SM00389	9.5E-8	37	104	IPR001356	Homeobox domain
Pfam	PF00046	7.7E-15	39	98	IPR001356	Homeobox domain
CDD	cd00086	3.37E-5	40	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MEAPQGGAQG EASQATGQEA NAVSPPLSPA SAAAAAQQNT RWNPTMEQVA VLERLYEHGV 60 STPTADQIQH ITGRLREHGP IEAKNVFYWF QNHKARDRSK QKQEGFAYFT RMLRRAPSLP 120 VMARPPGPLG RMPASPPELT MAPPSAAAAC SNGSAAGTHV MYAAPYYMPA PAPQASAGNA 180 GYYNLPQAHF GAAVYPRMDI TQDKHMIPTG MNQAQAAAPY NNPQRVVHPA TSGGASAGHR 240 AGRGRETLEL FPLRPTFVLP DNNAPGAAAS LTPSTPSAAS PSFSGGESVS AAESPDSSAE 300 APPPPFYDFL GLQPSTSQPA NHRPNFRPVS ALARRVRATR EHRKKRLGHG GRYANDACRA 360 LEIKLVSEPR GKSTRKCMNE RKGRDMERAR SLQVLTTKSF RLGSQAYQST TAPDLHRGKT 420 KNKARSRTYP GELASDLKLP MQRDAARGAL TYPPPIMPLD YCTTVSGRSA HWRRPRLPFF 480 LLRVARRSAG SSGPRVTRHS RAAGRPAPPD ADAARFVFYR ERARLEPGRQ VCCFFVESST 540 RREQNKNTPP PSPARLTSLL VAFGSTGLCL VRDSGVPSTS AASENLETCH AKREQDAMHQ 600 ASGDVLGLGT SPNALLFAET DGNFRLQSRF LKLEEPPLDP PCSISSVIA

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MEAPQGGAQG EASQATGQEA NAVSPPLSPA SAAAAAQQNT RWNPTMEQVA VLERLYEHGV  60
STPTADQIQH ITGRLREHGP IEAKNVFYWF QNHKARDRSK QKQEGFAYFT RMLRRAPSLP  120
VMARPPGPLG RMPASPPELT MAPPSAAAAC SNGSAAGTHV MYAAPYYMPA PAPQASAGNA  180
GYYNLPQAHF GAAVYPRMDI TQDKHMIPTG MNQAQAAAPY NNPQRVVHPA TSGGASAGHR  240
AGRGRETLEL FPLRPTFVLP DNNAPGAAAS LTPSTPSAAS PSFSGGESVS AAESPDSSAE  300
APPPPFYDFL GLQPSTSQPA NHRPNFRPVS ALARRVRATR EHRKKRLGHG GRYANDACRA  360
LEIKLVSEPR GKSTRKCMNE RKGRDMERAR SLQVLTTKSF RLGSQAYQST TAPDLHRGKT  420
KNKARSRTYP GELASDLKLP MQRDAARGAL TYPPPIMPLD YCTTVSGRSA HWRRPRLPFF  480
LLRVARRSAG SSGPRVTRHS RAAGRPAPPD ADAARFVFYR ERARLEPGRQ VCCFFVESST  540
RREQNKNTPP PSPARLTSLL VAFGSTGLCL VRDSGVPSTS AASENLETCH AKREQDAMHQ  600
ASGDVLGLGT SPNALLFAET DGNFRLQSRF LKLEEPPLDP PCSISSVIA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01988.1.g00090.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM490235	7e-74	AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene).
GenBank	BT037009	7e-74	BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds.
GenBank	EU954062	7e-74	EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds.
GenBank	KJ728384	7e-74	KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7509	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	1e-31	WUSCHEL related homeobox 2