PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01963.1.g00100.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 450aa MW: 49304.8 Da PI: 6.5124

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01963.1.g00100.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	59.7	5.5e-19	123	191	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT........EEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk........vveitYegeHnhe 59 +Dgy+WrKYG K ++g++f+rsY+rC+++ gC ++k v+++++d++ v+++tY+++H+++ Zpz_sc01963.1.g00100.1.am.mk 123 EDGYEWRKYGEKRINGAQFTRSYFRCAYKddtGCLATKYVQQTQDDGNnntvveppVFQVTYNNDHTCK 191 7*************************99999******998754444444478999***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-20	111	191	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-18	116	191	IPR003657	WRKY domain
SMART	SM00774	4.9E-27	122	192	IPR003657	WRKY domain
PROSITE profile	PS50811	15.824	123	168	IPR003657	WRKY domain
Pfam	PF03106	5.8E-22	123	191	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MPVDDCDGAV REVAQVYELI KTKLPLFLLQ RRHGQQEQPP ATTTTSLLSE ALRALNIALS 60 TMTTMQKQQQ QHQLEITSPA PAAAGSGNGA TTSVKRRRSS VLTEGGRKNS SSSWVNLTTV 120 PYEDGYEWRK YGEKRINGAQ FTRSYFRCAY KDDTGCLATK YVQQTQDDGN NNTVVEPPVF 180 QVTYNNDHTC KCAAATSAAS SAMEEENINK IPTTGPPPPP PGGDHTDVAM DMVPKEEETV 240 VGVLRPLADV SVEEDSSFFR SSCNELDMAR IMAESLMGDD PELQLLYNTF NPSKIQSFSS 300 APFLRVPFHR RLPAPSVPGT NQARQPSLIE LNPQLLPLPA VDRSVGFRSA GAMLRLLVCA 360 LFLLGGCHGR FVVEKNSLNV TAPEDLKGTY ECAIGNFGVP QYGGTMVGFV AYPKANRKAC 420 KDFDDFDISY KAKPGAFLAR RQGNVMFEVI

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MPVDDCDGAV REVAQVYELI KTKLPLFLLQ RRHGQQEQPP ATTTTSLLSE ALRALNIALS  60
TMTTMQKQQQ QHQLEITSPA PAAAGSGNGA TTSVKRRRSS VLTEGGRKNS SSSWVNLTTV  120
PYEDGYEWRK YGEKRINGAQ FTRSYFRCAY KDDTGCLATK YVQQTQDDGN NNTVVEPPVF  180
QVTYNNDHTC KCAAATSAAS SAMEEENINK IPTTGPPPPP PGGDHTDVAM DMVPKEEETV  240
VGVLRPLADV SVEEDSSFFR SSCNELDMAR IMAESLMGDD PELQLLYNTF NPSKIQSFSS  300
APFLRVPFHR RLPAPSVPGT NQARQPSLIE LNPQLLPLPA VDRSVGFRSA GAMLRLLVCA  360
LFLLGGCHGR FVVEKNSLNV TAPEDLKGTY ECAIGNFGVP QYGGTMVGFV AYPKANRKAC  420
KDFDDFDISY KAKPGAFLAR RQGNVMFEVI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4tjv_A	7e-30	370	449	3	85	Vacuolar-sorting receptor 1
4tjx_A	7e-30	370	449	3	85	Vacuolar-sorting receptor 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01963.1.g00100.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067500	1e-86	BT067500.1 Zea mays full-length cDNA clone ZM_BFc0068H05 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5045	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22570.1	2e-16	WRKY DNA-binding protein 38