PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01916.1.g00040.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 405aa MW: 43721.5 Da PI: 7.2734 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.5e-13 | 169 | 212 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+teE+ +++++ +G g+Wk I+r++ k+Rt+ q+ s+ qky Zpz_sc01916.1.g00040.1.am.mk 169 WSTEEHRQFLRGLCVYGRGDWKNISRHFVKTRTPVQVSSHAQKY 212 *******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-10 | 159 | 214 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.475 | 161 | 217 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.13E-16 | 164 | 218 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-9 | 165 | 215 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.8E-11 | 167 | 214 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-9 | 169 | 212 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-8 | 169 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MAMAAANLGP LLNGEWSPSD VAMAKSLIVK HNNSNHANAT SDDDIGAGSL NRKHRNIVDV 60 LHAQFPWKDR HQVTDLYVDV VVEMLQGGPE KMVAAAAGPT AAAAGGVELV NDNFGVVPVA 120 GHPPMENMEA LLAPVNVVEM SRAQRKTAER QPSRHPHASQ PERHRGRFWS TEEHRQFLRG 180 LCVYGRGDWK NISRHFVKTR TPVQVSSHAQ KYYRRLESAA TRQRYSINDV GLYDAEPWAA 240 PTNNSSGWEP LAIAAGGYNS NVYDVARGQQ GSTHPALAFA GGVGDNSNGY LTRGQQGSKQ 300 PTFSFAGGDN SNGYVAHGQQ GYTHQPAPAM NNIIPAPVWS PFQYNAGEVS TSQAAWTTGD 360 FQQMGYAAAA APPPAMEGTG SFVPAGDQQG AFFAPQQWMN NNICY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01916.1.g00040.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2T7E837 | 2e-75 | A0A2T7E837_9POAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 7e-22 | MYB family protein |