PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01888.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 566aa    MW: 60245.6 Da    PI: 8.8281
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01888.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-10138183146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     +g W  eEd  l++ v+++G+++W++I ++  + Rt+k+c++rw +
  Zpz_sc01888.1.g00050.1.sm.mkhc 138 KGTWAVEEDAVLLEHVRLHGPRDWSSIRSKGLLPRTGKSCRLRWVN 183
                                     799************************8876677**********87 PP
2Myb_DNA-binding42.31.7e-13194234345
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                     ++++eE+   +d+ +++G++ W++Ia +++ gRt++++k++w 
  Zpz_sc01888.1.g00050.1.sm.mkhc 194 KFSPEEERVVLDLQAKFGNK-WARIATYLP-GRTDNDVKNFWS 234
                                     79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-17133186IPR009057Homeodomain-like
PROSITE profilePS5129415.071133185IPR017930Myb domain
SuperFamilySSF466896.64E-26136233IPR009057Homeodomain-like
SMARTSM007175.2E-10137187IPR001005SANT/Myb domain
PfamPF002493.6E-9138183IPR001005SANT/Myb domain
CDDcd001673.59E-10140185No hitNo description
PROSITE profilePS5129420.394186241IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-18187239IPR009057Homeodomain-like
SMARTSM007173.5E-12191239IPR001005SANT/Myb domain
CDDcd001672.35E-10194233No hitNo description
PfamPF002496.3E-12194234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MSRGGGPVRE RRPRKSEVVG GGGAVARASS CARSSTRPLP APAASTGESN QSVGCQPNVL  60
RPATDTTPSL PPLLTAQKGQ SQGAAHFQTT SPTRSSRRAR ALRCAARGEA MARAPGAARR  120
RAAAGRKASG SSGESVRKGT WAVEEDAVLL EHVRLHGPRD WSSIRSKGLL PRTGKSCRLR  180
WVNKLRPNLK SGCKFSPEEE RVVLDLQAKF GNKWARIATY LPGRTDNDVK NFWSTRQKRL  240
ARLRRSPRPG RPSRNISAKK AAASSVASEF SRCFFPDQVP FEESFSSGQC RAATLSMDAE  300
NAAVIPYDQA GFQLDGLEGA FLPVEPATES QACSSDAAPL LGKTDNVDVD DFWSTSQKQS  360
GTFLCTPLPG QSSRNCGATT VAASSLQPPP AVGSFLDPVP FEGSFSAGQC CAGTTCIGAQ  420
NSELVPYDQT GSQLFDFGGA QPPPPVALAT DIQASSSNAA SLWPPPLQLY QSPYPLIDFP  480
GIPGSGDMTL GFVSAGATYD FAYHQEQLPL MQSPQMAFPI FGMHDGVKIE PRGLPPDHFD  540
DLPPDMFDSA DQLPPASSPS RTISDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-2613623925126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01888.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630004e-41AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316134e-41AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149604e-41AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126124e-41CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552184e-41CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824013.16e-90probable transcription factor MYB58
SwissprotQ0JB899e-68MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A2S3I9S81e-88A0A2S3I9S8_9POAL; Uncharacterized protein
STRINGPavir.Gb01130.1.p4e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.16e-57MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]