PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01886.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 36326.7 Da PI: 5.3113 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 131 | 181 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr +k +g+++AeIr p+ r +r +lg+f+taeeAa+ ++a++++++g Zpz_sc01886.1.g00070.1.am.mk 131 PKFRGVRKRK-WGKFAAEIRAPK----RrQRLWLGTFDTAEEAAREYDAYARQFRG 181 79*****999.**********83....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-12 | 131 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 132 | 189 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.03E-26 | 132 | 188 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.5E-28 | 132 | 189 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-19 | 132 | 190 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-32 | 132 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MATIAVRKPA PKQKRIKTEL AGATTAPVVR KPAPPRQQRA KKAPEPPATV RRLVRIFCND 60 LDATDSSGDE ADTPGEVHLR QFVMEVRFDQ LARFDGMTST SATRAPNRGG GGGKTKPAAV 120 PAAAAGGEAE PKFRGVRKRK WGKFAAEIRA PKRRQRLWLG TFDTAEEAAR EYDAYARQFR 180 GPSAMTNFPA PSPPSPPRAA VPAAPDRVVD ISSAEESSDE STRHSPVSVL RAAEAAPLNP 240 TDAADATQQN SSSSAGQNAK GDLCPFSADA LLPQVDPDLF LFGEAAPPSL FDDEFLPKLD 300 DFLGTSSPLD LGDLPLWPDA DGGSFSDIAD DLFAGDPFPV I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-17 | 127 | 189 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 153 | RAPKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01886.1.g00070.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008650357.1 | 6e-65 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A3L6E917 | 2e-65 | A0A3L6E917_MAIZE; Ethylene-responsive transcription factor 10 | ||||
STRING | GRMZM2G328197_P01 | 2e-64 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13133 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 9e-18 | cytokinin response factor 4 |