PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01838.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 232aa    MW: 24693.8 Da    PI: 4.5224
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01838.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.7e-07446541
                      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                   C+ ++   +   C  ++  lC+ C +e+H        H++ p
  Zpz_sc01838.1.g00080.1.am.mk  4 QCDACGAAAAAVVCCADEAALCARCDVEIHAAnklagkHQRLP 46
                                  6******99*********************6678888998877 PP
2zf-B_box28.53.1e-095687334
                      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                                   ++C+ ++e ++ +fC +++ llC+dC + +H
  Zpz_sc01838.1.g00080.1.am.mk 56 LPRCDVCQERPAFIFCVEDRALLCRDCDEPIH 87
                                  589**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.67147IPR000315B-box-type zinc finger
SMARTSM003365.9E-9447IPR000315B-box-type zinc finger
PfamPF006433.9E-5447IPR000315B-box-type zinc finger
SMARTSM003365.7E-1654101IPR000315B-box-type zinc finger
PROSITE profilePS501198.91654101IPR000315B-box-type zinc finger
PfamPF006434.3E-75797IPR000315B-box-type zinc finger
CDDcd000211.32E-957100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRIQCDACGA AAAAVVCCAD EAALCARCDV EIHAANKLAG KHQRLPLGGG ETAAALPRCD  60
VCQERPAFIF CVEDRALLCR DCDEPIHVPG TLSGNHQRFL ATGIRVGFSS VCSKPPSTGG  120
ATKAPAPAPQ EVPSPPFLPP PSGWAVEDLL QLSDYESSDK KDSPLGFKEL DWFADIDLLH  180
GHEAAEVPEL FASPQPAADA GFYKSSSAHQ SKKPRLELPD DDEDYFIVPD LG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01838.1.g00080.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9634381e-122EU963438.1 Zea mays clone 262479 salt tolerance-like protein mRNA, complete cds.
GenBankKJ7283001e-122KJ728300.1 Zea mays clone pUT6580 orphans transcription factor (Orphan198) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976063.11e-128B-box zinc finger protein 24
SwissprotQ962885e-72BBX24_ARATH; B-box zinc finger protein 24
TrEMBLK3Y9J21e-126K3Y9J2_SETIT; Uncharacterized protein
STRINGSi010884m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.19e-55DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]