PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01759.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 596aa    MW: 64749.5 Da    PI: 8.3248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01759.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-521923201128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat
  Zpz_sc01759.1.g00100.1.am.mk 192 VPPGFRFHPTEEELLNYYLRKKVASQEIDL-DVIRDVDLNKLEPWDIQEecKIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 271
                                   69****************************.9***************953444443456********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   ++g+Wkatg+dk++++   + +g++ktLvfykgrap+g+k+dW+mheyrl
  Zpz_sc01759.1.g00100.1.am.mk 272 AAGFWKATGRDKAIYN-AVKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 320
                                   ****************.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-55186330IPR003441NAC domain
PROSITE profilePS5100554.831192380IPR003441NAC domain
PfamPF023658.4E-28193320IPR003441NAC domain
SuperFamilySSF1019412.62E-55368380IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MSHDDVTSQD AAGSRWLSSE ICRSLAARPM LPRRRRDVGP RPPRSALSSP CARNLVPKEI  60
WWVIPAAPEA VAVSLPATAR ARAWYSGVQI NWTWMQRTNQ SGVNRAMRTN TAKDSNQPPL  120
YKDAPFLSCG LRPVCSSSSS GPLSSSPACC CSCTHQLELN PKNTLNKKRW QTQRLREKER  180
SMSISVNGQS CVPPGFRFHP TEEELLNYYL RKKVASQEID LDVIRDVDLN KLEPWDIQEE  240
CKIGSGPQND WYFFSHKDKK YPTGTRTNRA TAAGFWKATG RDKAIYNAVK RIGMRKTLVF  300
YKGRAPHGQK SDWIMHEYRL DDPATDAAAT ATVKLQPSFS LQSIHLHRST TPPIGPVTAA  360
AASSDAGQED GWVVCRVFKK KYHVKESGSG GGGKHGPRHG GGDHGQGSKA AAMHGQGLQY  420
SSSDETLDQI LTYMVRSCKQ EHEVLSPQSV GGGAGRPGSR CLGPIETVLG GHRFMKLPPL  480
ESPSAATALP HVPGETAAAS SGGGDDDLHR GGNGITDWAM MDRLVASHLN GQPDPDVPAE  540
DQLCSFDDGG DEGDGAMDGL AFYSAAATRL LSGGDDDLWN FARSAATSTS TERLID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-4318938114166NO APICAL MERISTEM PROTEIN
1ut4_B8e-4318938114166NO APICAL MERISTEM PROTEIN
1ut7_A8e-4318938114166NO APICAL MERISTEM PROTEIN
1ut7_B8e-4318938114166NO APICAL MERISTEM PROTEIN
4dul_A8e-4318938114166NAC domain-containing protein 19
4dul_B8e-4318938114166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179LREKER
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01759.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750810.0KT075081.1 Panicum virgatum secondary wall NAC master switch (SWN2A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164672.11e-169NAC domain-containing protein 43-like
SwissprotQ84WP61e-109NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A3B6RGI31e-171A0A3B6RGI3_WHEAT; Uncharacterized protein
TrEMBLA0A446XJ681e-171A0A446XJ68_TRITD; Uncharacterized protein
STRINGPavir.J20698.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.15e-94NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]