PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01756.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 364aa MW: 39489.1 Da PI: 8.8322

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01756.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	161.8	3.5e-50	116	271	1	136
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 aa +kdrhski+T++g+RdRR+Rls ++a++fF+Lqd+LGfdk+skt++WLl+ +k+ai+e++ + +++sec ++sss s Zpz_sc01756.1.g00020.1.am.mk 116 AASRKDRHSKICTAGGMRDRRMRLSFDIARKFFALQDMLGFDKASKTVQWLLNTSKAAIQEIMTD--DASSECVDGSSSLS 194 588************************************************************..66666966666666 PP TCP 82 as...nsssg......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 ++ n ka+++++++k+++ksa+++ l+ke+rakar+rarertrek+r+++++ Zpz_sc01756.1.g00020.1.am.mk 195 VDgkhN---LteelggdqqkkgngcsegkksaKARRETTTPKPPRKSANAHPVLDKETRAKARERARERTREKHRMRWVK 271 663330...235566666667789999999978888888************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-44	118	267	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.558	119	177	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.54	247	264	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MFPFCDSPSH KPHVHGDMPL YQQLQLSSPS PKPDQSSSSF YYYPCSPPFA AAADASSFDM 60 SYQLDSAAAT TPAPAVVNSP ELPMRPSMEQ QPARKHGPGN AQGAGGASLD TASPAAASRK 120 DRHSKICTAG GMRDRRMRLS FDIARKFFAL QDMLGFDKAS KTVQWLLNTS KAAIQEIMTD 180 DASSECVDGS SSLSVDGKHN LTEELGGDQQ KKGNGCSEGK KSAKARRETT TPKPPRKSAN 240 AHPVLDKETR AKARERARER TREKHRMRWV KLASAIDVEA AAGRDQPNAS NLNHSPSMNM 300 ASAAELGERC SSTLNHGGRT QEVSMPSEPN DMILAFGNGA YGGRNYCQEQ WELGGVVFAN 360 SRFY

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MFPFCDSPSH KPHVHGDMPL YQQLQLSSPS PKPDQSSSSF YYYPCSPPFA AAADASSFDM  60
SYQLDSAAAT TPAPAVVNSP ELPMRPSMEQ QPARKHGPGN AQGAGGASLD TASPAAASRK  120
DRHSKICTAG GMRDRRMRLS FDIARKFFAL QDMLGFDKAS KTVQWLLNTS KAAIQEIMTD  180
DASSECVDGS SSLSVDGKHN LTEELGGDQQ KKGNGCSEGK KSAKARRETT TPKPPRKSAN  240
AHPVLDKETR AKARERARER TREKHRMRWV KLASAIDVEA AAGRDQPNAS NLNHSPSMNM  300
ASAAELGERC SSTLNHGGRT QEVSMPSEPN DMILAFGNGA YGGRNYCQEQ WELGGVVFAN  360
SRFY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269\|PubMed:12524360, ECO:0000269\|PubMed:16642024, ECO:0000269\|PubMed:17947410, ECO:0000269\|PubMed:8536981, ECO:0000269\|PubMed:9087405}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01756.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982035.1	1e-153	transcription factor TEOSINTE BRANCHED 1
Refseq	XP_025796975.1	1e-153	transcription factor TEOSINTE BRANCHED 1-like
Swissprot	Q93WI2	1e-133	TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBL	A0A346M107	0.0	A0A346M107_CYNDA; Teosinte branched 1
STRING	Pavir.Ia00838.1.p	1e-157	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-25	TCP domain protein 12

Publications ? help Back to Top
Tenaillon MI, et al. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6 [PMID:11470895] Clark RM,Tavaré S,Doebley J Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus. Mol. Biol. Evol., 2005. 22(11): p. 2304-12 [PMID:16079248]