PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01740.1.g00100.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 266aa MW: 29018.8 Da PI: 7.1419

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01740.1.g00100.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.9e-12	154	179	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Zpz_sc01740.1.g00100.1.sm.mkhc 154 YQPDICKDYKETGYCGYGDSCKFMHD 179 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.44E-9	152	184	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	153	180	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	153	181	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-10	154	179	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-12	154	184	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MLARITNALP ALLRPGNHPK NIRKRPAAPT DSDDEDGGGG DIAALLSKKG PSAPGKFVFS 60 STDGSGEPRL HGQPRHRHPR DGDGLKQAEE TLKKNPSASS SASGSGEVYK GIHGYTDYKA 120 GYRREHTVSS EKAGGSHGPL RASAHIRVSA RFDYQPDICK DYKETGYCGY GDSCKFMHDR 180 GDYKSGWQLE KEYEEAEKAR KRHIAMGGGD GSDDEAAEDD DDDDDEGAHH SKNKKCFVCN 240 KPTLGIFNAA QEIRRKMAQD KQQQDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	5e-30	107	266	151	326	RING finger protein 113A
5z58_M	5e-30	107	266	151	326	RING finger protein 113A
6ff4_t	5e-30	107	266	151	326	RING finger protein 113A
6ff7_t	5e-30	107	266	151	326	RING finger protein 113A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01740.1.g00100.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041524	1e-110	BT041524.1 Zea mays full-length cDNA clone ZM_BFc0009J09 mRNA, complete cds.
GenBank	BT055174	1e-110	BT055174.1 Zea mays full-length cDNA clone ZM_BFc0109L02 mRNA, complete cds.
GenBank	JX469976	1e-110	JX469976.1 Zea mays subsp. mays clone UT3239 C3H-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	1e-108	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	4e-92	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	F2DBY5	1e-107	F2DBY5_HORVV; Predicted protein
STRING	Traes_4AS_866E12EE7.1	1e-107	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	6e-67	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]