PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01740.1.g00060.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 518aa MW: 56158.1 Da PI: 9.0561 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 4.1e-13 | 184 | 234 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ h ++Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Zpz_sc01740.1.g00060.1.am.mk 184 KMLHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 234 57799***********************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.36E-13 | 180 | 238 | No hit | No description |
PROSITE profile | PS50888 | 15.046 | 182 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 184 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-12 | 184 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.95E-17 | 184 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-11 | 188 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010374 | Biological Process | stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MSPGWQFIEC PLPCCIGAVT LLRPAAASFH NTTGAGARWL RPQSVYRHTR RSRSSRQAYV 60 LLRRAPHFRP MGDGPCELLV DGRCDRLRHV SDAEDLFSIL RTWEECTNGV PGGASAAESA 120 SAFRQTCTGG PVAAVGRPST TGSSRRRSSV ADEDKVGGAP MQKKQKGAAP PALQALDDDD 180 GVAKMLHIAV ERNRRKQMNE HLAVLRSLMP CFYVKRGDQA SIIGGVVDYI KELQQVLRLL 240 EAKKDRKAYA DQVLSPRPGA GASPRPLVKS TPPISPRLAV PISPRTPSRP GSPYNLPSCG 300 AGGRLPHPAA AAYMMATSPA VTPTPTSSSW CSSCNHSWHD YQQQNDPPQP QYLPTLDSIV 360 TELVAHASAS RPALVPDVKV EFAGPNLVLK TVSHRAPGQA LKIIAALESL SLEILHVSVS 420 TVDETMVHSF TIKIGIECEL SAEELVQEIQ RTFSFYPRQP SPLAARKASS SQPSQPPSSR 480 YQHLAYHTQI LLISLEFKEV CRGTALTPKG CEVDLNVD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 165 | RRRSSVADEDKVGGAPMQKKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01740.1.g00060.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061585 | 2e-76 | BT061585.1 Zea mays full-length cDNA clone ZM_BFb0161H07 mRNA, complete cds. | |||
GenBank | KJ726867 | 2e-76 | KJ726867.1 Zea mays clone pUT3408 bHLH transcription factor (bHLH139) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799200.1 | 1e-153 | transcription factor SPEECHLESS-like | ||||
TrEMBL | A0A3L6QHE7 | 1e-153 | A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like | ||||
STRING | Pavir.Ab01030.1.p | 1e-148 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53210.1 | 3e-37 | bHLH family protein |