PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01732.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 601aa    MW: 64219.5 Da    PI: 10.6245
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01732.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17500534135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Zpz_sc01732.1.g00080.1.am.mk 500 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 534
                                   *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-16494544IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-13498558No hitNo description
PROSITE profilePS5011411.227498530IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.5E-13498532IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.34E-11499546No hitNo description
PfamPF003202.2E-15500534IPR000679Zinc finger, GATA-type
PROSITE patternPS003440500525IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MNELSRDDEK EPTEPGRATT VKRKKGKKRE AGVVEKKVNA RWRGQEVPRA PALHVALTSA  60
QPPFTCGNYH RHFPCQQKQT AAAANQIHRR LAPPHRAPKQ HADAGAREQS GRGIRLCSVP  120
ARKKKDSSMD PAPRARTLSP SQTRTPDCGA HGNGRRRDAL NCARRERQRL ARGRAANEGR  180
APPRNGSRFL RTPEGDEREG QKSTGRLTIL GAWAWQTIPP PCHCVRTTPG PARRSCPRMA  240
SEWEMAAMGV DLGMGMSAYH HHHHHHNASG ITTAPMSSHD GGGGGGYSTA HHHYYGMAPV  300
GDAMRVDDLL DLSNAGAHEF FPTAAAAATE NGHHSGAMCE PSPKGNSSDH QTSFPSFTDE  360
FYIPSEEAAE LEWLSKFVDD SYSDIPNYSS AAHAAMAAAA AGNGGGNSTG QDGCVTAAPG  420
RGARSKRSRX XQAIPRGRRG RSGVALPHAA PARAVLSFLV LLPGRPNGSN GSRGSKKGPG  480
PVGAAAAGEA GLEGGGVRRC THCASEKTPQ WRTGPLGPKT LCNACGVRFK SGRLVPEYRP  540
AASPTFVLTQ HSNSHRKVME LRRQKELLMI RGSHREAAAA AAAAGTAGPR PDLMFRDYGV  600
C
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01732.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0700541e-108BT070054.1 Zea mays full-length cDNA clone ZM_BFb0374G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795835.11e-154GATA transcription factor 2-like
TrEMBLA0A2S3INR41e-152A0A2S3INR4_9POAL; GATA transcription factor
TrEMBLA0A2T7C9Z21e-152A0A2T7C9Z2_9POAL; GATA transcription factor
STRINGSi036273m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.13e-42GATA transcription factor 2