PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01730.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 306aa MW: 33926.1 Da PI: 8.4329 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 10 | 30 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+ksF++ +L H+ +H Zpz_sc01730.1.g00020.1.am.mk 10 CKYCKKSFPSGRSLGGHMAMH 30 ******************999 PP | |||||||
2 | zf-C2H2 | 17.5 | 1.1e-05 | 82 | 103 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C k+F +++ L H+r+H Zpz_sc01730.1.g00020.1.am.mk 82 ECQLCFKVFASSDALSIHMRVH 103 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.24E-7 | 8 | 30 | No hit | No description |
SMART | SM00355 | 2.7 | 8 | 30 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.2E-8 | 8 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 10 | 30 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.24E-7 | 76 | 103 | No hit | No description |
PROSITE profile | PS50157 | 11.281 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 82 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13894 | 8.7E-4 | 82 | 103 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.868 | 220 | 242 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 220 | 242 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.6E-7 | 220 | 242 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 222 | 242 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MPPRGMKHWC KYCKKSFPSG RSLGGHMAMH RKRLKKQPSS TPALSSADGG ACRYGLREKR 60 HKTWLMCDSS DDEYLTLLPK TECQLCFKVF ASSDALSIHM RVHTHHQQTM VANKVEESTE 120 GKGCGLRDFT VSTPVVLTYG DQEVGAARIL LMLSRHSDMC SASVERCNDD YERDSNSVYH 180 VQQSESQSGD DEPMKPENCS SDGRMKFSSS SNVLKATSIH KCKLCSRVFT SGNALGGHQK 240 FHKFHGHRKV QSTPNSAVAE TGHLVEEDNR SLSLNPSSSS SDRNYSGTIG KSELNLWLDA 300 SSILSE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01730.1.g00020.1.am.mk |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796823.1 | 1e-103 | uncharacterized protein LOC112876858 | ||||
Refseq | XP_025796824.1 | 1e-103 | uncharacterized protein LOC112876858 | ||||
TrEMBL | A0A3L6S766 | 1e-101 | A0A3L6S766_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ib03920.1.p | 1e-106 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14367 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 1e-08 | C2H2-like zinc finger protein |