PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01728.1.g00040.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 23026.9 Da PI: 6.5465 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 61 | 111 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg++ tae Aa+a+++a+++++g+ Zpz_sc01728.1.g00040.1.am.mk 61 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 111 6********.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.487 | 61 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-22 | 61 | 119 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 61 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-38 | 61 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.76E-16 | 61 | 120 | No hit | No description |
Pfam | PF00847 | 1.1E-12 | 62 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MCGGAIIYDY IPARRRASAA DFWPDDAEES DHHATERGTY AVVCFVALSA RPKARRERKN 60 QYRGIRQRPW GKWAAEIRDP VKGVRVWLGT YPTAEAAARA YDRAARRIRG AKAKVNFPND 120 VAPVRAAPAA PPQVPAPKVE APEPSDEVKE LSEELMAYEN YMNFLGIPYM EGGTAAAPAA 180 VEEQQQPAPG LWSFEDYYQP SLALFTE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 61 | 121 | 5 | 66 | ATERF1 |
3gcc_A | 4e-22 | 61 | 121 | 5 | 66 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01728.1.g00040.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035327 | 8e-83 | BT035327.1 Zea mays full-length cDNA clone ZM_BFb0055H11 mRNA, complete cds. | |||
GenBank | JX469915 | 8e-83 | JX469915.1 Zea mays subsp. mays clone UT3171 AP2-EREBP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023157587.1 | 2e-78 | putative AP2/EREBP transcription factor superfamily protein isoform X1 | ||||
TrEMBL | A0A1D6MRZ1 | 5e-77 | A0A1D6MRZ1_MAIZE; Ethylene-responsive transcription factor RAP2-2 | ||||
STRING | GRMZM2G169382_P01 | 2e-76 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 8e-30 | ERF family protein |