PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01621.1.g00090.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 332aa MW: 36166.9 Da PI: 9.0263

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01621.1.g00090.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.4	4.7e-36	116	171	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprCds ntkfCyynnyslsqPryfCk+C ryWtkGG+lrnvPvGgg+rkn++ Zpz_sc01621.1.g00090.1.am.mk 116 PSCPRCDSPNTKFCYYNNYSLSQPRYFCKGCCRYWTKGGSLRNVPVGGGCRKNRRG 171 58***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	103	170	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	116	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-30	117	170	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	118	154	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MRRPLSKRKA RNHERRVHQS SRRRAATLMG HASPPRSRVA FYRRTSHLAS SHRCPCIVIT 60 SLHRSDRSSP PINQATGPGQ MLSSRCDNML PLYAGGARRA VPLDHRRYRP NVEVAPSCPR 120 CDSPNTKFCY YNNYSLSQPR YFCKGCCRYW TKGGSLRNVP VGGGCRKNRR GKSARSTLAA 180 AAASGGAAAF SHRGTVRPDL ILEGMVGNQP VSDDKPAVAG GSAIDLALLY AKFLKPQPPP 240 GEQCPAEPES CPDARGEELS FSVDQSCYDS LGLPTDGGDL ILPSTWCHES KDELFDPLPE 300 DAMSLHDSIA GADDVWSNAF ACQGLEAALC RP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01621.1.g00090.1.am.mk

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087262	2e-87	BT087262.1 Zea mays full-length cDNA clone ZM_BFb0021J09 mRNA, complete cds.
GenBank	JX428477	2e-87	JX428477.1 Zea mays subsp. mays clone pUT3073 DOF20 C2C2-DOF type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006654467.1	1e-117	PREDICTED: uncharacterized protein LOC102700144
TrEMBL	A0A1D8F0J0	1e-117	A0A1D8F0J0_9POAL; Dof protein
STRING	OB05G25870.1	1e-117	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	8e-36	Dof family protein