PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01551.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 499aa    MW: 53123.8 Da    PI: 6.1162
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01551.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.1e-084194561954
                                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   Fe   ++yp+ +++  LA++ gLt +qV++WF N R +
  Zpz_sc01551.1.g00100.1.am.mk 419 FEHflKPYPDDHTKDVLAARSGLTRNQVSNWFINARVR 456
                                   5544589*****************************88 PP
2BELL40.28.7e-14280349470
                          BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeava...glgsakpYtslAlkaiSrhFrcLkdaiae 70 
                                   e q+ ++ Ll++l+++d++Y+q+ +++q   + F++ +   g g+a++ + +A +a+S  +  L+ +ia+
  Zpz_sc01551.1.g00100.1.am.mk 280 EAQRVRTNLLEMLQMLDQKYNQCLDEVQSTTAKFNTLMrqgGAGHATICAPFAHRAVSAMYHGLRRRIAG 349
                                   6788899*****************************9867688999**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.0E-5199349IPR006563POX domain
PfamPF075261.6E-23204348IPR006563POX domain
PROSITE profilePS5007110.738397460IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-24400473IPR009057Homeodomain-like
SMARTSM003899.1E-7400464IPR001356Homeobox domain
CDDcd000862.45E-11400461No hitNo description
SuperFamilySSF466892.14E-15402468IPR009057Homeodomain-like
PfamPF059205.5E-15417456IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MASNPSTFPQ LGLEAMNNGY FMAGNIIGGG GMMSADVTQF HPSVLLDQGG LGGAAVTVAE  60
LGAQFATNNV MLAAFANQLS AAAPARSEEM DCGFDVAGGD SATYGMIWNG ASDRSGTVSA  120
LQPYLVELPD AARFHFPLET YGGGPSAPAT SELSLTLCSK SSSDSVLNAA DQCSSGANSR  180
SALTELLQAS FVRARSTPAP FAAVVARSRY AAVAQEVLND VMGCLLGGVA DVAAESGSGV  240
DSGGAWPLGW SVDASFSVSS NRLVASSEDG GDVAGARAGE AQRVRTNLLE MLQMLDQKYN  300
QCLDEVQSTT AKFNTLMRQG GAGHATICAP FAHRAVSAMY HGLRRRIAGA VMAAGSRPTC  360
WGQSSSATAG DMERSWDWES AVIQKHWVAQ KARRGEQPCW RPQRGLPERS VAVLKAWMFE  420
HFLKPYPDDH TKDVLAARSG LTRNQVSNWF INARVRIWKP MIEEMYKDLK RSSAGQQGME  480
MEPQQIMSRA IRSQLEDGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01551.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796845.11e-178homeobox protein ATH1-like
TrEMBLA0A1E5VM430.0A0A1E5VM43_9POAL; Homeobox protein ATH1
STRINGPavir.Ab00820.1.p1e-169(Panicum virgatum)
STRINGSi016883m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.19e-52homeobox gene 1