PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01510.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 187aa    MW: 20721.2 Da    PI: 10.0566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01510.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-1691138148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT eEd  l++ v+  G g+W+  ar  g++Rt+k+c++rw++yl
  Zpz_sc01510.1.g00010.1.am.mk  91 KGPWTVEEDAVLAHHVAANGEGRWNELARAAGLRRTGKSCRLRWLNYL 138
                                   79********************************************97 PP
2Myb_DNA-binding44.14.7e-14144187146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg + + E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zpz_sc01510.1.g00010.1.am.mk 144 RGDFAPREQLLILELHFRWGNR-WSRIAAHLP-GRTDNEVKNYWRT 187
                                   6778899***************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.57886142IPR017930Myb domain
SuperFamilySSF466894.69E-2989185IPR009057Homeodomain-like
SMARTSM007177.3E-1390140IPR001005SANT/Myb domain
PfamPF002493.5E-1491138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1992145IPR009057Homeodomain-like
CDDcd001674.48E-993138No hitNo description
PROSITE profilePS5129416.08143187IPR017930Myb domain
SMARTSM007172.8E-7143187IPR001005SANT/Myb domain
PfamPF002493.5E-13144187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-20146187IPR009057Homeodomain-like
CDDcd001673.64E-9149187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
LSSSVRAALE KGGRRRLVVA TASSSSSLNS SPTRFFCPAS YAHSSLQLAE VSDPSRSMDA  60
LWMGACEWSS AAASSTSIED EEAAAAAELR KGPWTVEEDA VLAHHVAANG EGRWNELARA  120
AGLRRTGKSC RLRWLNYLRP GVRRGDFAPR EQLLILELHF RWGNRWSRIA AHLPGRTDNE  180
VKNYWRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-258818524120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01510.1.g00010.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524381e-105EU952438.1 Zea mays clone 1280407 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193528.13e-65transcription factor MYB108-like
SwissprotQ10MB43e-56MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A446QAB82e-64A0A446QAB8_TRITD; Uncharacterized protein
STRINGTraes_3B_AA6863F0D.13e-64(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.14e-54myb domain protein 24
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]