PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01467.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 328aa    MW: 37984.9 Da    PI: 8.8412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01467.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-057192223
                                    EETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                    +C  Cg +F  + +Lk+H+++H
  Zpz_sc01467.1.g00010.1.sm.mkhc 71 RCLECGACFQKPAHLKQHMQRH 92
                                    7********************9 PP
2zf-C2H221.65.6e-0798122123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     + Cp  dC+  ++rk++L+rH+ tH
  Zpz_sc01467.1.g00010.1.sm.mkhc  98 FNCPleDCPFIYKRKDHLNRHMLTH 122
                                     78**********************9 PP
3zf-C2H212.40.00048127152123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     + C+   C+ +Fs k n++rHi+  H
  Zpz_sc01467.1.g00010.1.sm.mkhc 127 FNCTvdGCDSRFSIKANMQRHIKEfH 152
                                     679999*****************988 PP
4zf-C2H222.62.7e-07200224223
                                     EET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                     kC+   C++sFs+ksnL++H++  H
  Zpz_sc01467.1.g00010.1.sm.mkhc 200 KCSfeGCDRSFSNKSNLTKHMKAcH 224
                                     79999*****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355122446IPR015880Zinc finger, C2H2-like
SMARTSM003550.0927092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4897097IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-67196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-1082124No hitNo description
Gene3DG3DSA:3.30.160.608.8E-897124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.8E-498122IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.22498127IPR007087Zinc finger, C2H2
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SuperFamilySSF576676.39E-8109158No hitNo description
Gene3DG3DSA:3.30.160.606.9E-9125154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.429127157IPR007087Zinc finger, C2H2
SMARTSM003550.02127152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
SuperFamilySSF576677.84E-9184241No hitNo description
SMARTSM003557.5E-4199224IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695199229IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-9200224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5225252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141230256IPR007087Zinc finger, C2H2
SMARTSM003554.2230256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCSGDEFDGG KSVGKTVYKD IRRYKCDFCD VVRSKKCLIQ AHMVEHHKDE LDKSETHNSN  60
GEKIVHQVEQ RCLECGACFQ KPAHLKQHMQ RHSQERLFNC PLEDCPFIYK RKDHLNRHML  120
THQGKLFNCT VDGCDSRFSI KANMQRHIKE FHEDENAVKS NRQFVCKEEG FRLNYVEVLK  180
KNIKRHLQAH EEAPSSERMK CSFEGCDRSF SNKSNLTKHM KACHDQLKPF SCRFAGCGKA  240
FTYKHVRDKH EQSSAHLYVE GDFEEVDAQL HSRSRGGRKR KALTVETLTR KRVTSPSEPS  300
ATDNGVDRNT EYSYVKANNG PNIRSAGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-20612512189PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-20612512189PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01467.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795605.11e-175transcription factor IIIA-like isoform X1
TrEMBLA0A2T8KTL11e-173A0A2T8KTL1_9POAL; Uncharacterized protein
STRINGSi020193m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.25e-43transcription factor IIIA