PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01458.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 432aa MW: 47121.6 Da PI: 6.7923 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 5.9e-52 | 62 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+ +yL++++++ ++++ +i++vdiyk++PwdLp k+ ++ ewyfFs+rd+ky++g r+nra+ sg Zpz_sc01458.1.g00020.1.am.mk 62 LPPGFRFHPTDEELILHYLRNRAASVPCPV-PIIADVDIYKFDPWDLPCKAVYGDGEWYFFSPRDRKYPNGIRPNRAAGSG 141 79****************************.88***************66666789************************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+++++ +ge vg+kk Lvfykgr pkg+kt+W+mheyrl Zpz_sc01458.1.g00020.1.am.mk 142 YWKATGTDKPIHDSaTGESVGVKKALVFYKGRPPKGTKTSWIMHEYRL 189 ************9988999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-64 | 52 | 225 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.683 | 62 | 225 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-27 | 63 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MPDVRNNESA RAHPARDDFT PGGAHRMPKL PLCQPQPRHA NGQSELKHIS TPSLHPAAAP 60 LLPPGFRFHP TDEELILHYL RNRAASVPCP VPIIADVDIY KFDPWDLPCK AVYGDGEWYF 120 FSPRDRKYPN GIRPNRAAGS GYWKATGTDK PIHDSATGES VGVKKALVFY KGRPPKGTKT 180 SWIMHEYRLA AGDPLAAAAA YRPPVKFRNA SMRLDDWVLC RIYRKSDQAS PTAPPIADYD 240 SHLLDHDELS SGGLYVDDIC SSFYGPTSGG GTTPSFGTMN ATTHHHQQQD TPARHPTIAS 300 FPEFFDDYSL AHMFDSAVPS DGDQQHAAFA MHPSLNQLLA VGDSAQYSSE SSDLIYSSDY 360 PGAAGVAKRK VMMSQQLDDD CVVDAGNPPA KKLHVSCFDA PQTATGGVLS ATSSHSQVLS 420 GLTNHNNMLP QF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-70 | 48 | 229 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-70 | 48 | 229 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-70 | 48 | 229 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-70 | 48 | 229 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-70 | 48 | 229 | 3 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-70 | 48 | 229 | 3 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01458.1.g00020.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067914 | 1e-180 | BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds. | |||
GenBank | EU971399 | 1e-180 | EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds. | |||
GenBank | KP297932 | 1e-180 | KP297932.1 Zea mays Zma1158 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161118.1 | 1e-142 | protein ATAF2-like | ||||
TrEMBL | A0A1E5V1K6 | 1e-144 | A0A1E5V1K6_9POAL; NAC transcription factor 29 | ||||
TrEMBL | A0A3L6TBL4 | 1e-144 | A0A3L6TBL4_PANMI; NAC domain-containing protein 48-like | ||||
STRING | Traes_2BS_C116E5668.1 | 1e-145 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 4e-75 | NAC-like, activated by AP3/PI |