PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc01439.1.g00110.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 506aa MW: 54229.1 Da PI: 11.201 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11 | 0.00079 | 126 | 168 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrR + + ++e Lr+l+P++ ++ + L A YI Lq Zpz_sc01439.1.g00110.1.am.mk 126 RRRDAAVTRRMEALRRLVPTS---YGDQDDELLLLSAAAGYIARLQ 168 777788999***********9...9*****************9998 PP | |||||||
2 | GATA | 56.9 | 2.9e-18 | 411 | 444 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C + +Tp+WR+gp+g++tLCnaCG+++++ + Zpz_sc01439.1.g00110.1.am.mk 411 CTHCASEETPQWRQGPEGPSTLCNACGVRFKSGR 444 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.55 | 116 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-5 | 126 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-8 | 126 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50114 | 12.149 | 405 | 441 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-16 | 405 | 459 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-14 | 407 | 468 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.8E-14 | 409 | 442 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.13E-14 | 410 | 459 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 411 | 436 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.8E-16 | 411 | 444 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 506 aa Download sequence Send to blast |
MGAPTGRRRC SASSASMRAR LPVASAVPSR RLPSSYRTTS XXTRCNGLSP RLLVTISLQS 60 ATTIYKADSI VAMGAPTGRR RCSASSASMR ARLPVASAVP SRRLPSSYRT TSTKASGGDG 120 KVRSSRRRDA AVTRRMEALR RLVPTSYGDQ DDELLLLSAA AGYIARLQAQ VRVMQLMANI 180 LEHAQEAPQV PARPRERRGF ITLVKTYGFP GSPPRNPAEI LPPSLSPEFV KPLRYKPKSP 240 NQSRKADDKW PPDHPFKQST ENSISLSCGA LTVAAAAATM AGVGAADKNA AAAVADELAG 300 GLDASLSAFF DHAGLESAVA EGGERAEEEE EELEWLSNMD AFPSVDTMAV EAEAAPSSSR 360 PLVGLGRLPH VVGPRTKGLR RRRRVTAPWN LPPLQPPPPP PASGGAPRRR CTHCASEETP 420 QWRQGPEGPS TLCNACGVRF KSGRLFPEYR PINSPTFSPL LHSNSHRRVL EMRRHVEDEA 480 ATASGGGARA RRAERAAARS AAAKAK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc01439.1.g00110.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25830.1 | 5e-32 | GATA transcription factor 12 |