PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01434.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 468aa    MW: 48993.9 Da    PI: 6.5995
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01434.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.6e-19365399135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++C+tt+Tp+WR+gp+g+ tLCnaCGl+y +k++
  Zpz_sc01434.1.g00030.1.am.mk 365 CTHCNTTETPQWREGPSGPGTLCNACGLHYNSKHR 399
                                   ******************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.5E-18359410IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.244359394IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-15361421No hitNo description
Gene3DG3DSA:3.30.50.109.6E-15363398IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.33E-19364421No hitNo description
PfamPF003201.4E-16365399IPR000679Zinc finger, GATA-type
PROSITE patternPS003440365390IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTSVGEGIEL EPDRETRYLG GEGPDRGGRW RSAPRCGDEE NLAWFSGGNM LSPFRAGGNG  60
GGDDIFAGLD DILPGGDLSC PDDRLDYVIK ALEGLDDVFL EELQKGGGPP PPRPVGDGEQ  120
KGALAAETAP GDVPEVPKED NVGRFGGGAF SNASCHAAST SAPPTASGPA DPCGALGSVP  180
DAGFVPPLPA HDAPNRAAAP YVAPPWSAQR DPYGVIPEPA PPFPANGGLL GSVVAPYLDP  240
QPRSVHHTPS GAIPDTAPKL PVHDAVPPAT ARASPSSGCA LPTTGETEPA PLLVSFSPLV  300
ADWVVPRKKR QLVTRRNPTW LPKPELYEAP PAAPPSAPSR RLEAGGSGNL PVVRRRRNRQ  360
RNRTCTHCNT TETPQWREGP SGPGTLCNAC GLHYNSKHRL LETYRPTKSP GFDSGKHSNR  420
QSKAAKIMEK KAAAELMRLT ADTASAPPIG DEFVDPLKSS GKPPKPLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01434.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3435834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-11GATA transcription factor 11