PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01425.1.g00160.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

DBB

Protein Properties

Length: 296aa MW: 31541.2 Da PI: 4.7526

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01425.1.g00160.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.8	8.3e-07	9	52	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ ++ +++ C ++ lC C H+ H+++pl Zpz_sc01425.1.g00160.1.sm.mkhc 9 NCDVCGGERAAVLCCADEAALCSACDRRVHRAnklagkHRRIPL 52 7*****************************77999999999886 PP
2	zf-B_box	22	3.3e-07	68	107	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++ + fC +++ lC+dC + +H+ H Zpz_sc01425.1.g00160.1.sm.mkhc 68 PLCDVCKLRRGLVFCVEDRAILCPDCDEPIHSAndltakH 107 78***999*******************655565555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.239	5	52	IPR000315	B-box-type zinc finger
SMART	SM00336	3.2E-11	5	52	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.6E-6	9	52	IPR000315	B-box-type zinc finger
CDD	cd00021	9.98E-7	10	52	No hit	No description
PROSITE profile	PS50119	9.03	65	112	IPR000315	B-box-type zinc finger
SMART	SM00336	5.8E-13	65	112	IPR000315	B-box-type zinc finger
CDD	cd00021	6.54E-7	68	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MSPGTMRVNC DVCGGERAAV LCCADEAALC SACDRRVHRA NKLAGKHRRI PLLHPSADAS 60 SDDNTTGPLC DVCKLRRGLV FCVEDRAILC PDCDEPIHSA NDLTAKHSRF LLVGAKLSTA 120 LGDEAPSSPD CGGGGESDGV AAACAQDSST DRSPVLECSD NNGSGGGAMI SDYLTNICPG 180 WRVDDLLFDE SPFSAKPGRD DQHVTSTDAD LFDVVAGRSE KRVLWGTSWT GDLGFEEVPT 240 AMAAPTTAAR PITNKQGHAR ETYWKNTMDN DSDVFAVPEF TPPPAKKARP SSFWCF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01425.1.g00160.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812143.1	1e-109	B-box zinc finger protein 20-like
TrEMBL	A0A2T7DU71	1e-108	A0A2T7DU71_9POAL; Uncharacterized protein
STRING	Si006993m	1e-103	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12100	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	9e-46	salt tolerance homolog2