PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01423.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 310aa    MW: 33762.2 Da    PI: 7.2357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01423.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT eEd +lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Zpz_sc01423.1.g00040.1.am.mk 14 KGPWTLEEDIILVSYVQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding48.22.5e-1567112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ Ed ++v++  +lG++ W++Ia++++  Rt++++k++w+++l
  Zpz_sc01423.1.g00040.1.am.mk  67 RGNFTPHEDGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129424.635965IPR017930Myb domain
SuperFamilySSF466891.18E-3011108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-151461IPR001005SANT/Myb domain
CDDcd001673.05E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129419.25566116IPR017930Myb domain
SMARTSM007173.0E-1366114IPR001005SANT/Myb domain
PfamPF002493.9E-1367112IPR001005SANT/Myb domain
CDDcd001672.97E-969110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTLE EDIILVSYVQ EHGPGNWRSV PINTGLMRCS KSCRLRWTNY  60
LRPGIRRGNF TPHEDGIIVH LQSLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKHQ  120
AIGAIFAPPP SDLSSSTVPT LTGAGHGGHP MITSPLSKDN YAPRTACSNP GDDVTQLISR  180
RSPFAAAGSL DAESSSSSSY ASSMDNISKL LDGFMKSTTP QNDAADIKPS SNPLLSFEQG  240
SGGSALPNFA DVLLPQPVLM EERSHHEQPK QQQEQAPLSS IEKWLLDEAA EQVGGLMDLS  300
DGCCSVPMLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01423.1.g00040.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283081e-138KJ728308.1 Zea mays clone pUT6588 MYB transcription factor (MYB69) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827828.11e-140transcription factor MYB30-like
SwissprotB3VTV72e-91MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A3L6P9F71e-147A0A3L6P9F7_PANMI; Transcription factor MYB30-like
STRINGSi026651m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.17e-81myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]