PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01411.1.g00210.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 493aa    MW: 54134.5 Da    PI: 11.5488
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01411.1.g00210.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-18321371155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + ykGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  Zpz_sc01411.1.g00210.1.am.mk 321 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 371
                                   68*****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-13321371IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-20322380IPR016177DNA-binding domain
PROSITE profilePS5103221.694322379IPR001471AP2/ERF domain
SMARTSM003801.4E-26322385IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-29322381IPR001471AP2/ERF domain
PRINTSPR003679.8E-8323334IPR001471AP2/ERF domain
CDDcd000184.42E-25323381No hitNo description
PRINTSPR003679.8E-8345361IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MMHAMPKTLV GGGKLGKAES ARDGAEDRDG VRGEAATRAR VADEERTVHG GGRRREQKGG  60
RRDGDRSRRH LRRKPPNQRS RLSVRSKGKP LETGARAPQD TASRRPVRRH WRSISNPRDR  120
VQRNYRSTVT LEGSSARPWT HRLRWSGVYD AQRIRFRQSP PSRKRERERE RERARAPGWG  180
EAQAGGRRPM TPRCARPNRS SAPRAPAGSD PTNLRSPLAR EPVPRVLDPS SRANLAGISG  240
AATRRSSAHG HVALDAPSTL PSRRSIRSIA MDVGALSSDY SSGTPSPVGG SDGSSASYMT  300
VSSAPPKRRA GRTKFKETRH PVYKGVRRRN PGRWVCEVRE PHGKQRIWLG TFETAEMAAR  360
AHDVAALALR GLGACLNFAD SPRLLRVPPL GAGHDEIRRA AAEAAEQFRP AFSQDQGNVA  420
VEEPITTLPD LLSSETQSTD RHPYCVVDDK FDLGMQGYLD MAQGMLIDPP PIEGSSGNGG  480
DDDDGGEVKL WSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164174RERERERERAR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01411.1.g00210.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6273530.0AB627353.1 Zoysia japonica gene for CBF, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.19e-34C-repeat/DRE binding factor 2