PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01401.1.g00180.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 320aa    MW: 35175.5 Da    PI: 5.4053
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01401.1.g00180.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.49.1e-202572148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+WT eEd+llv++v+ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Zpz_sc01401.1.g00180.1.sm.mkhc 25 RGPWTVEEDLLLVNYVAAHGEGRWNALARCAGLKRTGKSCRLRWLNYL 72
                                    89********************************************97 PP
2Myb_DNA-binding50.83.9e-1678121146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zpz_sc01401.1.g00180.1.sm.mkhc  78 RGNITAQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                                     7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2922072IPR017930Myb domain
SuperFamilySSF466894.49E-3123119IPR009057Homeodomain-like
SMARTSM007171.8E-162474IPR001005SANT/Myb domain
PfamPF002491.4E-172572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-232679IPR009057Homeodomain-like
CDDcd001674.80E-132772No hitNo description
PROSITE profilePS5129423.12573127IPR017930Myb domain
SMARTSM007171.2E-1477125IPR001005SANT/Myb domain
PfamPF002497.0E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2280125IPR009057Homeodomain-like
CDDcd001671.88E-1182121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKMAAREQRE MSSEDESPVA GELRRGPWTV EEDLLLVNYV AAHGEGRWNA LARCAGLKRT  60
GKSCRLRWLN YLRPDLRRGN ITAQEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKHARQL NCDVNSQQFK DLMRYLWMPR LLERIHSSGS SSPPDVTAGT APPPQQQQPP  180
AWSADDVVAA ANNEVELSCT TAASSVSTDA GIQQQPVVCP PAIVSAGGNV GWSCSDNSID  240
SIKSMSMIDT WCQAPYTGTP SAEYNPAQLG GSAETTCLSE VPGAGLSSTN VYAAADMALP  300
DLGETMWGAD DLWYTQIMGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-25221251103MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-242212524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01401.1.g00180.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794341e-163HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802225.11e-122transcription factor MYB2-like
SwissprotQ10MB42e-94MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1E5VNG41e-134A0A1E5VNG4_9POAL; Transcription factor MYB108
STRINGSi030584m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-82myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]