PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01365.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 267aa    MW: 29794.1 Da    PI: 5.2213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01365.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-15552148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Zpz_sc01365.1.g00050.1.sm.mk  5 KGSWTEEEDAQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 52
                                  799*******************************************97 PP
2Myb_DNA-binding51.42.6e-1658101146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rgr T++E+ l+v++++++G++ W++Iar ++ gRt++++k++w++
  Zpz_sc01365.1.g00050.1.sm.mk  58 RGRITADEERLIVELHAKWGSR-WSRIARSLP-GRTDNEIKNFWRT 101
                                   899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.405156IPR017930Myb domain
SuperFamilySSF466894.49E-27299IPR009057Homeodomain-like
SMARTSM007173.9E-13454IPR001005SANT/Myb domain
PfamPF002492.0E-13552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-20659IPR009057Homeodomain-like
CDDcd001674.10E-10752No hitNo description
PROSITE profilePS5129419.65157107IPR017930Myb domain
SMARTSM007172.4E-1457105IPR001005SANT/Myb domain
PfamPF002494.3E-1458101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2260106IPR009057Homeodomain-like
CDDcd001671.69E-1062101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTMRKGSWTE EEDAQLVWFV RLFGERRWDF LAKVSGLKRT GKSCRLRWVN YLHPDLRRGR  60
ITADEERLIV ELHAKWGSRW SRIARSLPGR TDNEIKNFWR TRMRKQKALG DQRQCKDDRS  120
TTTVAAASPS SSSVTTAFFS GGSPNSGGTA TSSSTVTESA QQGGSGEDDD EAELDEASTL  180
TTASQHQQEC CYTMDQLWNE IAAAEAAVSY SLVDGWGIGH AAAPAEPASM PSPVWEFCSD  240
YSLWMIDDEG SRWIEVACPG LSLMRYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2651064104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-25510658158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-25510658158MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-2651064104C-Myb DNA-Binding Domain
1msf_C6e-2651064104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01365.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283603e-92KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680579.19e-90LOW QUALITY PROTEIN: transcription factor MYB59
TrEMBLK3ZD389e-99K3ZD38_SETIT; Uncharacterized protein
STRINGSi024470m1e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-56myb domain protein 59