PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01352.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 142aa    MW: 15057 Da    PI: 10.2854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01352.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.8e-1088133454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +h e+ r+RRd++N +f  Lr  +P+       +++Ka+ L  A+ +I +L
  Zpz_sc01352.1.g00230.1.am.mk  88 SHVEAGRQRRDKLNCRFCDLRAAVPTV-----SRMDKASLLADATAHIAQL 133
                                   799999********************6.....49***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-1279141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.14184133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-1187138No hitNo description
PfamPF000101.2E-788133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1288142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-890139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSFSAPRPPA ALAPRRPRGS CSYWSSEIPE QWLGTGDNTL HCSSDGAAGP LSVGENQQCG  60
EPPAAAPAAK KRGRKPGSTR GTNGPVVSHV EAGRQRRDKL NCRFCDLRAA VPTVSRMDKA  120
SLLADATAHI AQLRGRVEKL EA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1787142762Transcription factor MYC2
5gnj_B1e-1787142762Transcription factor MYC2
5gnj_E1e-1787142762Transcription factor MYC2
5gnj_F1e-1787142762Transcription factor MYC2
5gnj_G1e-1787142762Transcription factor MYC2
5gnj_I1e-1787142762Transcription factor MYC2
5gnj_M1e-1787142762Transcription factor MYC2
5gnj_N1e-1787142762Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01352.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444645.14e-36transcription factor bHLH14
SwissprotQ336P53e-19MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A1Z5RAN98e-35A0A1Z5RAN9_SORBI; Uncharacterized protein
STRINGSb07g025330.11e-35(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-20bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]