PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01329.1.g00050.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 21736.2 Da PI: 9.6827 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.8 | 8.9e-12 | 48 | 89 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+teE+ +++++ + +G +Wk Iar++ k+Rt+ + s+ qky Zpz_sc01329.1.g00050.1.sm.mk 48 WSTEEHRQFLRGLRVYGRSDWKNIARHFVKTRTA--VSSHTQKY 89 *****************************99998..99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.021 | 40 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-12 | 40 | 94 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 44 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-7 | 44 | 92 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.6E-10 | 44 | 93 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.00E-8 | 48 | 92 | No hit | No description |
Pfam | PF00249 | 7.2E-8 | 48 | 89 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MQREVLDDDP AMDNMDMLLG PVNVVDTTRA RRQPPRYPRT LRNKGRFWST EEHRQFLRGL 60 RVYGRSDWKN IARHFVKTRT AVSSHTQKYY RRQESGVARQ QYSINDVGLY DTEPWAAPTN 120 NSSGSWETLS FARGDYNNSN GYIAFGQQAP AQPALAMNNP APAMNNPAPT MNDTTPAMNY 180 TALAMNYTDP P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01329.1.g00050.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-19 | Homeodomain-like transcriptional regulator |