PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01322.1.g00090.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 543aa    MW: 56765.6 Da    PI: 9.5595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01322.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056082123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ++C++C+k F r  nL+ H r H
  Zpz_sc01322.1.g00090.1.sm.mkhc 60 FVCEICNKGFQRDQNLQLHRRGH 82
                                    89*******************88 PP
2zf-C2H213.80.00017136158123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     +kC +C+k +  +s+ k H +t+
  Zpz_sc01322.1.g00090.1.sm.mkhc 136 WKCDKCSKKYAVQSDWKAHVKTC 158
                                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-75982No hitNo description
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355220101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-7131156No hitNo description
SMARTSM0035590136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEVQPTPTTT PVASSGGAQP QQLPPPGPPA KKKRALPGMP DPDAEVIALS PKTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSGKEARKRV YVCPEPSCVH HDPTRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHVKTCGS REYRCDCGTL FSRRDSFITH  180
RAFCDALAEE SAKARAGAPA EEDGRSAAVG PPPAPPPSQV PPPAAPAPVR HQPPPPVPAA  240
PPAPHHAEQR NERETNAPEP VQFTPPPQAP AMPVPSQAPA TAANVCVGTS SSRSSVAAAS  300
QSLIGGMFAP SSMAPAAPQF TTLGDVVRGP DRALPVKPPP LCLATDAPSS IFSAPVATDR  360
QHFAPQPPPP PPSPSPHMSA TALLQKAAQM GATSSSSSFL RGLGLDVSTS SPGPSSSGPP  420
RHPETPLQQW LPRVETDASA PMLSAGLGLG LPYDSTGAPV CLPELMMGQS TLFSAKPATL  480
DFLGLGMSPT GAPASRGLSP FIQPIRGAMG IGGSSAGAAE TFGAGHGAQA KPWERNPSSS  540
PIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36132193364Zinc finger protein JACKDAW
5b3h_F6e-36132193364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01322.1.g00090.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545020.0BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
GenBankBT0546180.0BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBankEU9555780.0EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985335.10.0protein indeterminate-domain 1
SwissprotQ9LVQ71e-141IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLK4A8770.0K4A877_SETIT; Uncharacterized protein
STRINGSi035083m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-96indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]