PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01318.1.g00080.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 305aa    MW: 33168.8 Da    PI: 8.7451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01318.1.g00080.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08180224554
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Zpz_sc01318.1.g00080.1.sm.mk 180 HSIAERLRRERIAERIRLLQELVPNT-----NKTDRAAMLDEILDYVKFL 224
                                   99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-13173230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-13177230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6180224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAGQQLPGGP EDDFLDHLFA FPSAGAGGGA PGHHPLPLGL SLNAAAAKPV SFLPDMVRVR  60
VRACLRRLTP DASLTEGVGV LLQDRDPVQL AGLFPPAFTG AGGMQPMSLR PAPPHQVFHA  120
PPKQGEGAVA QQPQTPAPRP KVRARRGQAT DPHSIAERQP QTPAPRPKVR ARRGQATDPH  180
SIAERLRRER IAERIRLLQE LVPNTNKTDR AAMLDEILDY VKFLRLQVKD EASDGGSTQH  240
IWEKWSTDGT EKEVAKLMEE DIGAAMQFLQ SKALCMMPIS LAMAIYDTQH PQEGNSFKPE  300
PNTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01318.1.g00080.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960754e-76FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.11e-110transcription factor UNE12
TrEMBLA0A2S3GW171e-108A0A2S3GW17_9POAL; Uncharacterized protein
STRINGPavir.J03221.1.p1e-107(Panicum virgatum)
STRINGSi030704m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-53bHLH family protein